Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4740g00011 ATGGAGTCTAGGAGGTACGGTTCCGGAGATAAGGGTTTTGTGCCCAGTAATACATTTCCACCTCCTGATACGCTTGCGAGAAGCAAAAATCCCTTCCTGGGTTGGGAATTGAAAACCCAACCTAGTTTTTCCAACGACATTTTGGCCTCGGCTCAACAACATTTAGAGGGTCAAGTTTGTGAGGAAGTGGGATTTCCAGAAATGTTGGGGAAACAGTTGTCTAATGATCCGCTTGGCTGTATTATGAATGAGCCAAATTCATTTTCTGAAGGTGAAGACTCTGCTTCAAAGCTTTCAAACTCTGCGGTTGAATCTTACAGCCGGGATTCCCTCATTGATTTGAAGCTAGGACGAATTGGTGATCAAAGAGATGCCAATGAATCGCCATTTTCCAAAGGTATTCCTCTTTTGTGTTCTTCAGAGTCATCTCCGACCCCCAAGAGAGTGAGAACTTCAGGGGTTCCGTCACAAACTGCTTACTGCCAAGTATATGGTTGCAACAAGGATCTAAGCGCCTCTAAAGACTACCACAAGAGGCACAAAGTTTGTGAGGTTCACTCCAAGACTGCTAAAGTCATAGTAAATGGCATAGAGCAAAGGTTTTGCCAACAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGTTAAGCGCAGCTGTCGCAAACGCCTTGCAGGCCATAATGAGCGTCGGAGAAAGCCACAAATGGGTACTCATCCTGGAAAGGGCAGGAGGTTGCTTCAGTCATATAGTGATAGCAGATTCCAGGGCAGCATGCTAACAAGAGCACCTTTTGTCTGCCAAGATATACTCCCTAGTATTGTTTTGCATTCTGACAAGTTTGGCACTGGTAGCTGGTGGAAACCTATAAAGGTCCAAGGTGGGAATGATTTTAGGCATATCTCTGCTATCACAAATGGGCATTCTCAATCAAGATCTTTGCTTCCTCCATATGCTGAAAAGCAATATCCGCTTCTGAATGAAACCGGTGCTATATCCACTACAGGAAGCATATTCTGTGAGAACAACAATGAGTATCCACCTGCTCTTGGAGGTGCCTATTCTGGGCCGCCATCGTCATACCAAGATACTGTCTTAGGAAGTGAAGACTTTAATGTTTTTGATACAGCATCAACCATTCAGGGATTATCGGGACTTACAGACTCAGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCATTAAGCCATGCATCAGCAATTCCCGTGGGTCGCCCCATTGTTACTCCAAGCAGCCACGGCTACTACAGCCTGAGTCATGCCTCTGAAAAGATCATGGGAATAAGCTCTCAGGCATCTGCAGGTGGGATGTCAGCATCAGAAATCGCAGATGGTATTTTTCAAGGGTCAGAGGTTGTGAATATGAAAGCCCGTGAAGATGGCCCCACTATTGACTTGCTTCAATTGTCATCACAGCTTCACCGAGTTGAGCACCAACGGCAATCCTTGCAGGTCATTGACACAAGAAAAAAGGAATTTCAGCAGGCGGCAGGAGCCTGTGACAGTTCTTCTGAAGAACAAAGAATGTAA 1560 0.4526 MESRRYGSGDKGFVPSNTFPPPDTLARSKNPFLGWELKTQPSFSNDILASAQQHLEGQVCEEVGFPEMLGKQLSNDPLGCIMNEPNSFSEGEDSASKLSNSAVESYSRDSLIDLKLGRIGDQRDANESPFSKGIPLLCSSESSPTPKRVRTSGVPSQTAYCQVYGCNKDLSASKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDVKRSCRKRLAGHNERRRKPQMGTHPGKGRRLLQSYSDSRFQGSMLTRAPFVCQDILPSIVLHSDKFGTGSWWKPIKVQGGNDFRHISAITNGHSQSRSLLPPYAEKQYPLLNETGAISTTGSIFCENNNEYPPALGGAYSGPPSSYQDTVLGSEDFNVFDTASTIQGLSGLTDSGCALSLLSSQSQNSLSHASAIPVGRPIVTPSSHGYYSLSHASEKIMGISSQASAGGMSASEIADGIFQGSEVVNMKAREDGPTIDLLQLSSQLHRVEHQRQSLQVIDTRKKEFQQAAGACDSSSEEQRM 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4740g00011 519 ProSiteProfiles Zinc finger SBP-type profile. 158 235 IPR004333 GO:0003677
Pral4740g00011 519 SUPERFAMILY SBT domain 159 239 IPR036893 GO:0003677|GO:0005634
Pral4740g00011 519 Gene3D - 152 222 IPR036893 GO:0003677|GO:0005634
Pral4740g00011 519 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 90 501 IPR044817 GO:0003677
Pral4740g00011 519 MobiDBLite consensus disorder prediction 225 246 - -
Pral4740g00011 519 MobiDBLite consensus disorder prediction 1 25 - -
Pral4740g00011 519 FunFam Squamosa promoter-binding-like protein 14 152 222 - -
Pral4740g00011 519 Pfam SBP domain 161 234 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4740g00011 Pral-Chr4740 56743 61221 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4740g00011 112 490 SBP-box Gene Family AT1G69170 36.292 7.75e-52 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pral4740g00011 SBP 4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4740g00011 - - gmx:100777766 574.318