Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4740g00004 ATGGGCTCAACAAGTGAAACAGCTCCCCTCCTAGAGCGCAAGGAAGAGGTAAGGAGCAATGGTGCCTCGCTGAATGAACTGACAGACCTTGAACGTGGTGATGCAGCTGCAAACGTGGGATTTGGCAGGGTGCTTTCACTTGCAAAGCCTGAAGCTGGGAAGCTGATATTCGCAACGCTGGCTCTTTTAGTTTCATCCACATCAGATATTTTAGTTTCAAAATTTGGTGGGAAGATAATTGACATTGTCTCAGGAGATGCTCAAACTCCCGAAGATAAAGCGAAAGCTTTGGAAGCCGTCAAGAACACTATACTATACATTTTTCTGATTGTTGTTGTTGGATCAGTTTCAACAGCACTTGATGATTGGCTTTTCTCCTCAGCTAGTGAAAGAGTTGTTGCTCGGCTTAGAAAAAGATTATTTAGTCACCTCATAAGCCAGGAGATAGCCTTCTTTGATGTAACCCGAACAGGGGAAATAATGAGTAGGCTATCTGAAGATACACAGATCATAAAAAATGCAGCAACCACCAATCTTTCTCAAGCGCTGAATAGCTTATCGATTGCATTTATCGGTCTCGTCTTCATGTTTTGGACGTCGTGGAAGTTGACATTGTTGGCTTTAGCTGTTGTGCCTGCTACTTTTATTGCTCTGCGTAAATTTGGTTGGTTCCTACGTGACCTTTCTCAGAAAACTCAAGATGCAGCCGCAGCAGCTGCTTCAATAGCCGAGGAATCCTTTGGTGCCGTGAGGACGGTAAGATCTTTTGCACAAGAAGAATATGAAATATCCCGCTACTCTAAGAAAGTTGATGAGACACTTAAGCTTGGAATTAAACAAGCAAAAGTTGTCGGACTCTTTTCTGGAGGCATTTTTGCGGCAAATACACTGTCAATTATTGGAGTTGTTATCTATGGGGCTTATTTGACGATTACAGATTCCATGTCCTCTGGTGATCTCACGGCCTTCATTCTTTATAGTCTCAATGTGGGAGTTTCTATATCTGGTCTCTCAGGATTGTATGCCATAGCCATGAAAGCCGTGGGTGCAAGCAGACGGGTGTTTCATCTTCTTGATCGTGTGTCATCAATGCCAATGTCGGGAAACAAATGTCCTCTGGGAGAACAAAATGGGGAGGTGGAGCTCGATGATGTCTGGTTTGCATATCCATCTCGTCCTAGTCATATGGTACTTAAGGGAATTACAATGAAATTGCGGCCTGGCTCAAAGGTTGCTCTTGTTGGTCCAAGTGGTGGTGGAAAGACTACAATAGCAAACCTAATTGAAAGATTTTATGACCCAACCAAGGGAAAGATCCTGCTGAATGGGGTTCCGCTGGTAGAAGTATTACATGAGCATCTGCACAAGAAGATCAGTATTGTGAGTCAGGAGCCTGTACTTTTCAACTGTTCCATTGAGGAGAACATAGCTTATGGATTTGAATGCAAAGTAAATCCTGCTGATATAGAAAATGCAGCTAAAATGGCAAATGCGCATGAATTCGTATCAAAATTCACAGACAAATATCAGACCCATGTTGGGGAGCGTGGGGTAAGGCTTTCAGGAGGGCAGAAACAGAGAATAGCAATTGCCAGAGCCTTGCTTATGGACCCAAATATTCTTCTCCTGGATGAAGCCACTAGTGCCCTGGATGCTGAAAGCGAATATTTAGTACAGGATGCTAAGGAACGTCTGATGAAGGGAAGGACAGTTCTTGTTATTGCTCACAGGCTATCTACTGTGAAGAGTGCTGATACAGTTGTAGTTGTTTCTGATGGTGAGATTGTGGAAAGTGGCACCCATGAAGGCCTTCTCAGCAACAATGGTGTCTATTCTGCATTAGTCGGTAGACAGCTACAGACAATGAAACCCAGATACCCTGTGTCCCAGTTCACAAGGGCCACTTAA 1908 0.4376 MGSTSETAPLLERKEEVRSNGASLNELTDLERGDAAANVGFGRVLSLAKPEAGKLIFATLALLVSSTSDILVSKFGGKIIDIVSGDAQTPEDKAKALEAVKNTILYIFLIVVVGSVSTALDDWLFSSASERVVARLRKRLFSHLISQEIAFFDVTRTGEIMSRLSEDTQIIKNAATTNLSQALNSLSIAFIGLVFMFWTSWKLTLLALAVVPATFIALRKFGWFLRDLSQKTQDAAAAAASIAEESFGAVRTVRSFAQEEYEISRYSKKVDETLKLGIKQAKVVGLFSGGIFAANTLSIIGVVIYGAYLTITDSMSSGDLTAFILYSLNVGVSISGLSGLYAIAMKAVGASRRVFHLLDRVSSMPMSGNKCPLGEQNGEVELDDVWFAYPSRPSHMVLKGITMKLRPGSKVALVGPSGGGKTTIANLIERFYDPTKGKILLNGVPLVEVLHEHLHKKISIVSQEPVLFNCSIEENIAYGFECKVNPADIENAAKMANAHEFVSKFTDKYQTHVGERGVRLSGGQKQRIAIARALLMDPNILLLDEATSALDAESEYLVQDAKERLMKGRTVLVIAHRLSTVKSADTVVVVSDGEIVESGTHEGLLSNNGVYSALVGRQLQTMKPRYPVSQFTRAT 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4740g00004 635 ProSitePatterns ABC transporters family signature. 520 534 IPR017871 GO:0005524|GO:0016887
Pral4740g00004 635 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 56 346 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4740g00004 635 PIRSF ABC_prm/ATPase_B 2 633 - -
Pral4740g00004 635 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 380 617 IPR003439 GO:0005524
Pral4740g00004 635 SMART AAA_5 407 594 IPR003593 GO:0016887
Pral4740g00004 635 SUPERFAMILY ABC transporter transmembrane region 43 359 IPR036640 GO:0005524|GO:0016020
Pral4740g00004 635 Pfam ABC transporter transmembrane region 55 327 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4740g00004 635 Gene3D - 378 622 IPR027417 -
Pral4740g00004 635 FunFam ABC transporter B family member 25 107 377 - -
Pral4740g00004 635 FunFam ABC transporter B family member 25 378 620 - -
Pral4740g00004 635 Gene3D ABC transporter type 1, transmembrane domain 105 377 IPR036640 GO:0005524|GO:0016020
Pral4740g00004 635 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 8 622 IPR039421 -
Pral4740g00004 635 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 371 618 IPR027417 -
Pral4740g00004 635 CDD ABC_6TM_AtABCB27_like 58 354 - -
Pral4740g00004 635 Pfam ABC transporter 398 548 IPR003439 GO:0005524
Pral4740g00004 635 CDD ABC_MTABC3_MDL1_MDL2 380 618 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4740g00004 Pral-Chr4740 13335 17997 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4740g00004 100 620 Calmodulin-binding Proteins AT2G36910 35.382 1.86e-89 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4740g00004 - - qsa:O6P43_022927 944.495