Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4740g00003 ATGGGCTCAACAAGTGAAACAGCTCCCCTCCTAGAGCGCAAGGAAGAGGTAAGGAGCAATGGTGCCTCGCTGAATGAACTGACAGACCTTGAACGTGGTGATGCATCAAAATTTGGTGGGAAGATAATTGACATTGTCTCAGGAGATGCTCAAACTCCCGAAGATAAAGCGAAAGCTTTGGAAGCCGTCAAGAACACTATACTATACATTTTTCTGATTGTTGTTGTTGGATCAGTTTCAACAGCACTTGATGATTGGCTTTTCTCCTCAGCTAGTGAAAGAGTTGTTGCTCGGCTTAGAAAAAGATTATTTAGTCACCTCATAAGCCAGGAGATAGCCTTCTTTGATGTAACCCGAACAGGGGAAATAATGAGTAGGCTATCTGAAGATACACAGATCATAAAAAATGCAGCAACCACCAATCTTTCTCAAGCGCTGAATAGCTTATCGATTGCATTTATCGGTCTCGTCTTCATGTTTTGGACGTCGTGGAAGTTGACATTGTTGGCTTTAGCTGTTGTGCCTGCTACTTTTATTGCTCTGCGTAAATTTGGTTGGTTCCTACGTGACCTTTCTCAGAAAACTCAAGATGCAGCCGCAGCAGCTGCTTCAATAGCCGAGGAATCCTTTGGTGCCGTGAGGACGGTAAGATCTTTTGCACAAGAAGAATATGAAATATCCCGCTACTCTAAGAAAGTTGATGAGACACTTAAGCTTGGAATTAAACAAGCAAAAGTTGTCGGACTCTTTTCTGGAGGCATTTTTGCGGCAAATACACTGTCAATTATTGGAGTTGTTATCTATGGGGCTTATTTGACGATTACAGATTCCATGTCCTCTGGTGATCTCACGGCCTTCATTCTTTATAGTCTCAATGTGGGAGTTTCTATATCTGGTCTCTCAGGATTGTATGCCATAGCCATGAAAGCCGTGGGTGCAAGCAGACGGGTGTTTCATCTTCTTGATCGTGTGTCATCAATGCCAATGTCGGGAAACAAATGTCCTCTGGGAGAACAAAATGGGGAGGTGGAGCTCGATGATGTCTGGTTTGCATATCCATCTCGTCCTAGTCATATGGTACTTAAGGGAATTACAATGAAATTGCGGCCTGGCTCAAAGGTTGCTCTTGTTGGTCCAAGTGGTGGTGGAAAGACTACAATAGCAAACCTAATTGAAAGATTTTATGACCCAACCAAGGGAAAGATCCTGCTGAATGGGGTTCCGCTGGTAGAAGTATTACATGAGCATCTGCACAAGAAGATCAGTATTGTGAGTCAGGAGCCTGTACTTTTCAACTGTTCCATTGAGGAGAACATAGCTTATGGATTTGAATGCAAAGTAAATCCTGCTGATATAGAAAATGCAGCTAAAATGGCAAATGCGCATGAATTCGTATCAAAATTCACAGACAAATATCAGACCCATGTTGGGGAGCGTGGGGTAAGGCTTTCAGGAGGGCAGAAACAGAGAATAGCAATTGCCAGAGCCTTGCTTATGGACCCAAATATTCTTCTCCTGGATGAAGCCACTAGTGCCCTGGATGCTGAAAGCGAATATTTAGTACAGGATGCTAAGGAACGTCTGATGAAGGGAAGGACAGTTCTTGTTATTGCTCACAGGCTATCTACTGTGAAGAGTGCTGATACAGTTGTAGTTGTTTCTGATGGTGAGATTGTGGAAAGTGGCACCCATGAAGGCCTTCTCAGCAACAATGGTGTCTATTCTGCATTAGTCGGTAGACAGCTACAGACAATGAAACCCAGATACCCTGTGTCCCAGTTCACAAGGGCCACTTAA 1797 0.4363 MGSTSETAPLLERKEEVRSNGASLNELTDLERGDASKFGGKIIDIVSGDAQTPEDKAKALEAVKNTILYIFLIVVVGSVSTALDDWLFSSASERVVARLRKRLFSHLISQEIAFFDVTRTGEIMSRLSEDTQIIKNAATTNLSQALNSLSIAFIGLVFMFWTSWKLTLLALAVVPATFIALRKFGWFLRDLSQKTQDAAAAAASIAEESFGAVRTVRSFAQEEYEISRYSKKVDETLKLGIKQAKVVGLFSGGIFAANTLSIIGVVIYGAYLTITDSMSSGDLTAFILYSLNVGVSISGLSGLYAIAMKAVGASRRVFHLLDRVSSMPMSGNKCPLGEQNGEVELDDVWFAYPSRPSHMVLKGITMKLRPGSKVALVGPSGGGKTTIANLIERFYDPTKGKILLNGVPLVEVLHEHLHKKISIVSQEPVLFNCSIEENIAYGFECKVNPADIENAAKMANAHEFVSKFTDKYQTHVGERGVRLSGGQKQRIAIARALLMDPNILLLDEATSALDAESEYLVQDAKERLMKGRTVLVIAHRLSTVKSADTVVVVSDGEIVESGTHEGLLSNNGVYSALVGRQLQTMKPRYPVSQFTRAT 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4740g00003 598 CDD ABC_6TM_AtABCB27_like 37 317 - -
Pral4740g00003 598 MobiDBLite consensus disorder prediction 1 22 - -
Pral4740g00003 598 PIRSF ABC_prm/ATPase_B 35 596 - -
Pral4740g00003 598 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 334 581 IPR027417 -
Pral4740g00003 598 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 40 309 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4740g00003 598 ProSitePatterns ABC transporters family signature. 483 497 IPR017871 GO:0005524|GO:0016887
Pral4740g00003 598 CDD ABC_MTABC3_MDL1_MDL2 343 581 - -
Pral4740g00003 598 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 40 585 IPR039421 -
Pral4740g00003 598 FunFam ABC transporter B family member 25 70 340 - -
Pral4740g00003 598 FunFam ABC transporter B family member 25 341 583 - -
Pral4740g00003 598 Gene3D - 341 585 IPR027417 -
Pral4740g00003 598 Gene3D ABC transporter type 1, transmembrane domain 68 340 IPR036640 GO:0005524|GO:0016020
Pral4740g00003 598 SMART AAA_5 370 557 IPR003593 GO:0016887
Pral4740g00003 598 SUPERFAMILY ABC transporter transmembrane region 40 322 IPR036640 GO:0005524|GO:0016020
Pral4740g00003 598 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 343 580 IPR003439 GO:0005524
Pral4740g00003 598 Pfam ABC transporter transmembrane region 40 290 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4740g00003 598 Pfam ABC transporter 361 511 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4740g00003 Pral-Chr4740 13335 17997 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4740g00003 63 583 Calmodulin-binding Proteins AT2G36910 35.382 9.74e-90 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4740g00003 - - qsa:O6P43_022927 876.7