Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4739g00006 ATGTCAAAGTTAGTGACACAGGATGCGATTTCGATCTTGTTTGCGAATCCGTCTCCGGATTCTTCATCGGAGCTTCCCGAGATCGTCGTCCAAGTCCTGGATCTCAAGCAAAGCGGCAACAGATATATGTTTACTGCAAGCGATGGGAGATTGAAATTAAGAGCAATCCTACCCTCAAGTCAGAATCCCCTGGTACTCTCAGGGAATATTCAGAATCTGGGTCTTATTCGCATCATCGACTACACTCTTAACGACATCCCAAATAAGTCAGAGAAGTATCTTATTGTGACAAAATGTGAACCAGTCTCCCCTGCACTTGAAATGGAAATAAAGCATGAGGTAAAGAGCGAGAAAACTGGCATTATTCCGAAACGAGGGCAAGAGGACGTAATGAAAAGTCAGGTAAAAACTGAAGTAGCAGGCCTTCTTTTGAAACCAAAGCAAGACATCGTGGCCAAATCTGCTGCCCAGATCGTACATGAACAACACGGAAATATGGTCCCTGCTGCTCGAATGGCCATGACTCGCAGAGTGCGTCCTCTGGTTTCCTTAAACCCTTATCAGGGTAACTGGACAATAAAAGTTCGGGTTACAAACAAAGGAATCATGCGCACTTATACGAATGCAAGAGGGGAAGGTTGTGTCTTTAACGTGGAACTGACAGATGAAGATGGTACTCAAATTCAAGCAACAATGTTTAATGAAGCTGCAAGGAAATTCTATGAAAAATTTGTGTTGGGGAAGGTTTACTACATTTCAAAGGGCACTTTAAAAGTTGCTAACAAGCAGTTCAAAACCGTTCAAAATGATTATGAAATGACACTGAATGAGAACTCTGAAGTGGAAGAGGCACCCAATGAAGAAAGCTTTGTTCCAGAAACAAGGTTCAAGTTTGTCCCGATTGATCAGCTGGGTCCGTATGTCAACAGAAATGAACTTGTCGATGTCATTGGAATTGTTCAAAATGTGTCTCCTACAATGAGCATACGCAGGAAGAGCAGCAATGAAACTGTCCCGAAGCGTGATATTACTATTGCTGATGAGACGAAGAAAACAGTAGTTGTGTCTTTGTGGAATGAGAATGCGACTCATGTCGGGCAAGAATTGTTGGACCTTGCTGGTAATTCTCCTGTAGTAGCAATCAAATCACTCAAGGTTGGGGACTTTCAAGGTGTTTCCTTGTCAACTATAAGCAAAAGTCTAGTGCTGGTAAATCCAGACATACCTGAAGCAAAGAAGCTTAGATGCTGGTACGAATCTGAAGGCAAAGATGTATCACTGGCGTCCATAAGCTCTGGCACGAGTTCAGCATCCATGAATGGAGTGAGATCAGTGTATTCAGACCGTGTTTCACTTTCTCATATTACGTCAAACCCATCCTTAGGGGAGGACAAGCCTTCATTTTTCAGTATTAGGGCACATATAAGCTATATCAAGCCTGACCAGACGATGTGGTACCGAGCTTGTAAAACATGCAACAAGAAAGTCACCGAATCCATTGGCGCTGGGTATTGGTGTGAAGGCTGCCAAAAAAATTATGAAGAGTGCAGTTTAAGATACATTATGGTTGTAAGAGTTGCTGATAGAAGTGGGGAAGCCTTTGTCTCAGTCTTCAACGAAGAAGCTGAGAAGATTATTGGGTGCTCTGCTGAAGAACTTGATAGCCTAAAGTCGCAGGAGGGGGAAGATAATCCATATCAGCTGAAACTGAAACAAGCAACATGGACTCCTTATCTTTTCCGGGTCAGTGTCTCTCAAAATGAGTATAATAATGAGAAAAGACAGAGGATAACAGCCCGGGCAGTTGTTCCGATGGACTTTGCTGCCGAGTCGAGATTTCTCTTGGAAGAGATATCGAAAATGAGAGTTTCTCAATAG 1878 0.4292 MSKLVTQDAISILFANPSPDSSSELPEIVVQVLDLKQSGNRYMFTASDGRLKLRAILPSSQNPLVLSGNIQNLGLIRIIDYTLNDIPNKSEKYLIVTKCEPVSPALEMEIKHEVKSEKTGIIPKRGQEDVMKSQVKTEVAGLLLKPKQDIVAKSAAQIVHEQHGNMVPAARMAMTRRVRPLVSLNPYQGNWTIKVRVTNKGIMRTYTNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYEKFVLGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEAPNEESFVPETRFKFVPIDQLGPYVNRNELVDVIGIVQNVSPTMSIRRKSSNETVPKRDITIADETKKTVVVSLWNENATHVGQELLDLAGNSPVVAIKSLKVGDFQGVSLSTISKSLVLVNPDIPEAKKLRCWYESEGKDVSLASISSGTSSASMNGVRSVYSDRVSLSHITSNPSLGEDKPSFFSIRAHISYIKPDQTMWYRACKTCNKKVTESIGAGYWCEGCQKNYEECSLRYIMVVRVADRSGEAFVSVFNEEAEKIIGCSAEELDSLKSQEGEDNPYQLKLKQATWTPYLFRVSVSQNEYNNEKRQRITARAVVPMDFAAESRFLLEEISKMRVSQ 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4739g00006 625 CDD RPA1_DBD_A 180 283 - -
Pral4739g00006 625 SUPERFAMILY Nucleic acid-binding proteins 296 425 IPR012340 -
Pral4739g00006 625 SUPERFAMILY Nucleic acid-binding proteins 447 621 IPR012340 -
Pral4739g00006 625 CDD RPA1_DBD_B 313 419 - -
Pral4739g00006 625 PANTHER REPLICATION FACTOR A 1, RFA1 191 584 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pral4739g00006 625 FunFam Replication protein A subunit 4 114 - -
Pral4739g00006 625 Pfam OB-fold nucleic acid binding domain 191 277 IPR004365 GO:0003676
Pral4739g00006 625 CDD RPA1_DBD_C 452 620 IPR047192 -
Pral4739g00006 625 Pfam Replication factor-A protein 1, N-terminal domain 5 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Pral4739g00006 625 Gene3D - 5 112 IPR012340 -
Pral4739g00006 625 FunFam Replication protein A subunit 177 286 - -
Pral4739g00006 625 Pfam Replication factor-A C terminal domain 468 614 IPR013955 -
Pral4739g00006 625 SUPERFAMILY Nucleic acid-binding proteins 1 108 IPR012340 -
Pral4739g00006 625 Pfam Replication protein A OB domain 308 404 IPR031657 -
Pral4739g00006 625 Gene3D - 432 621 IPR012340 -
Pral4739g00006 625 Gene3D - 177 286 IPR012340 -
Pral4739g00006 625 FunFam Replication protein A subunit 290 429 - -
Pral4739g00006 625 NCBIfam replication factor-a protein 1 (rpa1) 5 620 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pral4739g00006 625 Gene3D - 291 431 IPR012340 -
Pral4739g00006 625 SUPERFAMILY Nucleic acid-binding proteins 179 288 IPR012340 -
Pral4739g00006 625 FunFam Replication protein A subunit 434 621 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4739g00006 Pral-Chr4739 34859 39430 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4739g00006 1 625 Core DNA Replication Machinery Family AT5G08020 68.211 0.0 916
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4739g00006 K07466 - qsa:O6P43_002222 1004.97