Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4737g00059 ATGGAAGAATCCAAGCATGTGTGCAAGTTCTGCAGGAAAATCTTCCCGTGCGGAAGATCCTTGGGGGGTCACATGAGGTCCCACGTCTCCGGCAATCATTCAGCTGAAACAGAGGATTCACTTGCAGCGACGAAGCTCTCGCGTGTCGAGAAGGAGAATGGCGAAGCAGCGGCTTCTGCTACTGGCTATGATCTGAGAGAGCAGAGGAAGAAGACTTGGAGAGTCGCTGATTCGAGTGACGGCACTAAGGCATCAGAAAAGTTGTGCAAGCAGTGTGGTAAAGGGTTTCGCTCTTGGAAGGCTCTGTTTGGTCACATGAAATGTCACTCCCAGAAAGAAAGAGCTTCTGTTACTGATGATGATCATAATCATAATAGCTTGGAAGATCAAGATTCATGGACTGTCATGGATAGCCAGTCTGACAATGAACCTCCCAGGCCAAGAACAAGAATAAGATCCAAGAGAACAAGAACGACTACAACCTCGTCTCTGTCCTTCTCCAACCTTTCCTCTTCTGTTTCTGAAATTGAGCAAGAGCAAGAAGAGGTCGCTTTGAGCTTGATGATGCTTAGCAGGGGCGTGGCTTCACGGGGATCTCGAGAAATGGGGTCCGAGAAGAAACCAAAAAGATCAGAGCTTTTGACCCCTGATCACTTTCCAAGAAGTGGGTCTAGCAAGAGCAAGACAAGGATGATAGATTTTCAGTCTGCAATGGAGGATTCTGAGGAAGATGATAAAGAGCAAGGGAAGAGGAATTTCAAGTTCTTAGGTTCAGAATTGAACTCAAATCCTTCCAGGAGTTCTGACAGAAGAAGCAAGTTCGAGTGTGCTACTTGCAACAAGGTCTTCCGTTCTTACCAAGCTCTTGGTGGCCATAGAGCCAGCCATAAGAAGATCGCCAGAGACTGCTTTGTTCCAATAGATGAGACCAGTGATAACTCTATAAAACCTGATCTGTCTCACCATGAAGCAATTTCTGGTTCGGATCTTCATGAAGATGCAGAGTTGGACAAGAGCAAAGATCATGAACGCTCAATCAGCCTCAAGAGTTTTCCATCTGGGCAAGCAATGGATGGGCATAAAAGATCCCATTCAACTGAGGCACCTGAGAGTAGAAAAGCAGAAAGTACAGATTTGATTGAGGAACCAGTTGAGAAAATTAGGGATTTGATTGATCTTAATCTTCCAGCTGATGCGGATGCTGCAGAGGAAGAAGACAGCAACAATAATAGCAATTCTGAGTGTTACAGATCATCACCCTGGTGGGTGAGAAGCATCCACAACAAGCAGGAAGCTCTAGTAGGCCTATTGTCTAACTAA 1320 0.4576 MEESKHVCKFCRKIFPCGRSLGGHMRSHVSGNHSAETEDSLAATKLSRVEKENGEAAASATGYDLREQRKKTWRVADSSDGTKASEKLCKQCGKGFRSWKALFGHMKCHSQKERASVTDDDHNHNSLEDQDSWTVMDSQSDNEPPRPRTRIRSKRTRTTTTSSLSFSNLSSSVSEIEQEQEEVALSLMMLSRGVASRGSREMGSEKKPKRSELLTPDHFPRSGSSKSKTRMIDFQSAMEDSEEDDKEQGKRNFKFLGSELNSNPSRSSDRRSKFECATCNKVFRSYQALGGHRASHKKIARDCFVPIDETSDNSIKPDLSHHEAISGSDLHEDAELDKSKDHERSISLKSFPSGQAMDGHKRSHSTEAPESRKAESTDLIEEPVEKIRDLIDLNLPADADAAEEEDSNNNSNSECYRSSPWWVRSIHNKQEALVGLLSN 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4737g00059 439 MobiDBLite consensus disorder prediction 195 271 - -
Pral4737g00059 439 MobiDBLite consensus disorder prediction 114 128 - -
Pral4737g00059 439 MobiDBLite consensus disorder prediction 199 216 - -
Pral4737g00059 439 MobiDBLite consensus disorder prediction 314 347 - -
Pral4737g00059 439 MobiDBLite consensus disorder prediction 395 416 - -
Pral4737g00059 439 MobiDBLite consensus disorder prediction 312 383 - -
Pral4737g00059 439 SUPERFAMILY beta-beta-alpha zinc fingers 6 109 IPR036236 -
Pral4737g00059 439 MobiDBLite consensus disorder prediction 218 232 - -
Pral4737g00059 439 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 38 IPR013087 -
Pral4737g00059 439 ProSiteProfiles Zinc finger C2H2 type domain profile. 274 296 IPR013087 -
Pral4737g00059 439 Pfam C2H2-type zinc finger 274 298 - -
Pral4737g00059 439 Pfam C2H2-type zinc finger 6 28 - -
Pral4737g00059 439 Pfam C2H2-type zinc finger 89 111 - -
Pral4737g00059 439 Pfam C2H2-type zinc finger 349 365 - -
Pral4737g00059 439 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Pral4737g00059 439 Gene3D Classic Zinc Finger 3 109 - -
Pral4737g00059 439 MobiDBLite consensus disorder prediction 156 174 - -
Pral4737g00059 439 ProSitePatterns Zinc finger C2H2 type domain signature. 276 296 IPR013087 -
Pral4737g00059 439 SMART c2h2final6 87 109 IPR013087 -
Pral4737g00059 439 SMART c2h2final6 274 296 IPR013087 -
Pral4737g00059 439 SMART c2h2final6 6 28 IPR013087 -
Pral4737g00059 439 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 114 IPR013087 -
Pral4737g00059 439 MobiDBLite consensus disorder prediction 360 383 - -
Pral4737g00059 439 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Pral4737g00059 439 MobiDBLite consensus disorder prediction 114 174 - -
Pral4737g00059 439 MobiDBLite consensus disorder prediction 233 253 - -
Pral4737g00059 439 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4737g00059 Pral-Chr4737 289358 290880 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4737g00059 338 400 C2H2 Transcription Factor Family AT1G26610 48.438 1.75e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4737g00059 zf-C2H2_6 3.7e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4737g00059 - - pcin:129309523 595.504