Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4737g00027 ATGGCGGAGGAGGAATCGCCTTCGTCTCCTACTGTATTGAGCATGGAGGGTCTTGACGATGTGGAAGACTACGTTTGGTCAGCATCTGAACCGGAGGGTTTGGCAAGGGAAACATACCATCATTTATATGAGCTTATGCAGAATGGCAATGTGGCATTTCGGGATGACCGTATGGAAGAGGCGATCAACTTTTACTCTAGAGCAAATAGCATCAGGACTGGTGATCCAGTCATACTCAATAACCGAAGTGCGGCTTATATCAGAATTAGCCAATTTTTAAAACACAGACCTCCATCAGCTTCAGAATATAGTCCGTTGAGTGGGCTTGATCCTACAACACATGCTGAACTTGGTTTGAAGGATGCTGAGAAGCTTGTCAACATCCGAAGTACTTCAGTAAAATCATACCTTTTGAAGGCCAATGCTCTTTTTCTGCTGGAGAAATATGAGATGGCTCGGGATGTTATTCTTTCGGGCCTTCAAGTTGATCCATATAGTAATTCTCTACGTGTGTCTCTTTCAAACCTGGAAAGAGCATTGGCTAGCTTGGCGAAGATGAGTAAACATGGACAGCCAGAGCGCTCTGATGACTTTGATTGCACTCTTTGCCTCAAGTTACTTTATGAACCTGTTACAACCCCTTGTGGACATTCTTTTTGCCGGTCATGTCTATTTCAGTCAATGGATCGTGGCAACAGGTGCCCGTTGTGCAGGACAGTTCTGTTTATTAGTCCTAGAACATGTTCCGTGAGTGTGACATTGAAAAACATTATACAAAAGAATTTTCCGGAGGAATATGCTGAAAGGAAGCAAGAGAATGACAGTTTGAGCAACCTGGGCCTAGATTTGATCCCTCTCTTTGTCATGGATGTTGTCATTCCATGCCAAAAGTTTCCACTCCATATATTTGAACCCCGTTATAGACTGATGGTAAGAAGAATAATGGAAGGAAATCGCCGGATGGGAATGGTTATAATCGATTCTGAAGCAGATTCCCTGGCTGAGTTTGCCTGTGAAGTGGAAATTACTGAGTGTGAACCACTTCCGGATGGACGTTTCTATATAGAGATTGAAAGTCGTAGGAGATTTCGCATCATCCGATCATGGGATCAAGATGGGTATCGTGTTGCAGAGGTCGAATGGATTCAGGATATTATGCCATCGGAAGGTAGAGAGAGAGAAGATTTACAGGAAATAACAAATAATGCGGCAGAAAGTGCTCGATCATGGATCAGAAGGGCTAAAGAAGCAGCAGGACAAGATCAAAGACGACTCGAGAGACTGTTGAATGTTGAAGTGATGATGCCCCCGCTACAAGACCCTGAGCGCTTCAGTTTCTGGCTTGCTACCTTATCAAACCGGAGGCCTTCAGAAAAACTTGATCTTCTGCGCTTGAGAGATACCAAAGAGAGGATCAGGCGGGGTTTGATATATCTGCGAGCTGAGGAACAAGGGTGCAGAATCCAGTAA 1470 0.4429 MAEEESPSSPTVLSMEGLDDVEDYVWSASEPEGLARETYHHLYELMQNGNVAFRDDRMEEAINFYSRANSIRTGDPVILNNRSAAYIRISQFLKHRPPSASEYSPLSGLDPTTHAELGLKDAEKLVNIRSTSVKSYLLKANALFLLEKYEMARDVILSGLQVDPYSNSLRVSLSNLERALASLAKMSKHGQPERSDDFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDRGNRCPLCRTVLFISPRTCSVSVTLKNIIQKNFPEEYAERKQENDSLSNLGLDLIPLFVMDVVIPCQKFPLHIFEPRYRLMVRRIMEGNRRMGMVIIDSEADSLAEFACEVEITECEPLPDGRFYIEIESRRRFRIIRSWDQDGYRVAEVEWIQDIMPSEGREREDLQEITNNAAESARSWIRRAKEAAGQDQRRLERLLNVEVMMPPLQDPERFSFWLATLSNRRPSEKLDLLRLRDTKERIRRGLIYLRAEEQGCRIQ 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4737g00027 489 PANTHER RING FINGER PROTEIN 127 37 481 - -
Pral4737g00027 489 SUPERFAMILY TPR-like 43 180 IPR011990 GO:0005515
Pral4737g00027 489 ProSiteProfiles Zinc finger RING-type profile. 200 238 IPR001841 -
Pral4737g00027 489 Pfam Zinc finger, C3HC4 type (RING finger) 200 237 - -
Pral4737g00027 489 CDD RING-HC_LONFs_rpt2 197 241 - -
Pral4737g00027 489 Gene3D - 282 384 IPR046336 -
Pral4737g00027 489 SMART ring_2 200 237 IPR001841 -
Pral4737g00027 489 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 279 IPR013083 -
Pral4737g00027 489 ProSitePatterns Zinc finger RING-type signature. 215 224 IPR017907 -
Pral4737g00027 489 SMART lon_5 283 481 IPR003111 -
Pral4737g00027 489 Gene3D Tetratricopeptide repeat domain 41 179 IPR011990 GO:0005515
Pral4737g00027 489 SUPERFAMILY RING/U-box 195 263 - -
Pral4737g00027 489 Pfam ATP-dependent protease La (LON) substrate-binding domain 284 479 IPR003111 -
Pral4737g00027 489 ProSiteProfiles Lon N-terminal domain profile. 281 481 IPR003111 -
Pral4737g00027 489 SUPERFAMILY PUA domain-like 284 479 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4737g00027 Pral-Chr4737 117673 126793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4737g00027 191 241 C3H Transcription Factor Family AT1G74990 37.037 1.57e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4737g00027 - - lja:Lj0g3v0312049.1 784.252