Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4725g00008 ATGGACGCTCTTGAATCGAACCCTAATCCTTCTCCATTTCTTCCGTCCGAAACAGTCGTTTCGTACGATCATAACCCTGCTCCTCCGCCCCCGGAGAGCTTGGCATCGGATTTGCAGACGACATATGAGCAAACTGCGAACTCCGATTATCAAAACTCTTCGAAAACCCTTGCTTCGGATGGTCCAAACGTTAACGGTCAACCCCCGTCTGCTACTGGGAATGGATACGAGAACGGACTGGATAGCAGTCAGGGCGGTGCCGATAGCTGTAGCAATTCGAAGCCTGTGAGTGTGAAGCCGTTGATTTCTGAAAACGCGTGGACGAATAATACACAGAGTGGCACCGACAAGGATCACTCTGGTGGGGAAGAGGAAACTACAAGCAAACGTCGCCGCCGTAGTCGATGGGACCCGCAACCTGATTCCAATGATCAGAGTGGTGGTGAAGCCGGTGGCGGAACGAAGAAGAGGAAGTCACGATGGGCCGATGATGAGCCGAAGCCGGTGATTCAGCTTCCCGATTTCATGGGCGGTATTGAGTTTGATCCTGAAATTCAAGCTTTGAATAGTAGGCTTCTTGAGATCAGTCGAATGCTGCAATCAGGTTTGCCTTTAGATGATCGCCCTGAAGGTGCTAGATCTCCTTCACCTGAACCGATATATGATAACATGGGAATTAGAATTAACACTAGAGAATATCGTGCCCGTGAAAGATTGCAAAAGGAGAGGCAAGAAATCATTTCTCAGATTATCAAGAAAAACCCCGCATTCAAGCCACCCGCCGATTATAGGCCACCGAAGCTTCAGAAGAAGCTGTACATACCAATGAAAGAATATCCTGGTTACAACTTTATAGGGCTTATTATTGGTCCTCGAGGCAACACACAGAAGCGCATGGAAAGAGAAACTGGTGCTAAAATTGTGATTCGAGGTAAAGGGTCAGTGAAAGAGGGTAGACTGCAACAGAAGAGGGATTTGAAACCTGACCCTTCAGAGAATGAAGATTTGCATGTTCTTGTGGAGGCAGAAACACAAGAATCACTTGATGCTGCCGCAGGCATGGTGGAGAAACTCTTGCAGCCTGTGGATGAGGTGTTGAATGAGCATAAGAGGCAACAGCTTAGAGAACTTGCGGCCTTGAATGGTACAATTAGGGATGAAGAATATTGCCGGCTGTGTGGTGAACCTGGCCATCGCCAATATGCATGCCCTACGCGCACTTCTACATTTAAGAGTGAAGTGGTCTGTAAGCATTGTGGGGATGGTGGTCACCCAAGCATAGACTGTCCAGTGAAGGGAGCCACAGGCAAGAAGATGGATGACGAATATCAGAACTTTTTGGCAGAGCTGGGAGGGACAGTTCCAGAATCATCTATAAAACAGACCAACACGTTGGCAATTGGTTCAGGCAATTCTGGAAGCAATCCTCCTTGGGCTAACAATTCTGGATCGACTGGCGGTACATCACAAGCTGGCTTAGGGGCTAATCCGGTTAAAAAGGAAATTGATGATACAAATTTGTACATTGGGTATTTGCCGCCTACTCTTGATGATGATGGTCTGATCCAATTGTTTCAACAATTTGGTGAGATTGTTATGGCAAAGGTTATAAAAGATCGGATGACTGGTTTGAGTAAAGGATATGGGTTTGTCAAGTATGCTGATATCCAAATGGCAAATAATGCAATTATGGCCATGAATGGCTATCGCCTTGAGGGTAGAACCATTGCAGTGAGAGTTGCTGGTAAGCCGCCTCAGCCTACTGTTCCTCCTGGTCCGCCAGCATCAGCCATGCCCACATATCCTATTTCAAGCCAGCCAGTTGGTGCCTATCCATCCCAACAATATGCTGCTGGTGGTCCTTTAGGCGCTGCACCCCCTGGAAGTTATGCCAGTGCCCCAGTTCCATGGGGACCTCCTGTTCCTCCACCTTATGCTCCTTATGCTCCTCCCCCTCCTGGATCAACTATGTACCCTCCTATTCAAGGTCAATCTATACCTCCATACGGTATTCAGTATCCTCCAGTCCAGACAGCCCCTCCAGGTGCCCCATCCCAGCCTGCAGCTTCTAGTGAATCACAGCAGAGTTTCCCTCCAGGAGTGCAGTCTGACAGCAGCACTTCTACTCAATCTACGTCGGCCAATATTTATGGGAGTTCAATACCTTCTATGCCACCAACTGCTCAACCTACATATGCTACATCTTATGGTTATCCGCCTTACTATGGTACAGTTCCCCCTCCACCTCCCCCGCCTGCCCCTGCACCTATCCCGACTTCAGACCACATGCCTTGGGCTACCAATCCTTCTGTGCCGCCGCCTCCATCAACTACAGAGAAGACAACGTATGGTGCAGATCAATCTCAGAGCATAGGAAATGTGCCTTGGGCCACAAATCCTCCAATGCCACCCCCTTCTTCAACTGCAGAGAAGACAACATATGGTGCAGATTCGGAGTATGAGAAATTCATGGCAGAGATGAAATGA 2487 0.4845 MDALESNPNPSPFLPSETVVSYDHNPAPPPPESLASDLQTTYEQTANSDYQNSSKTLASDGPNVNGQPPSATGNGYENGLDSSQGGADSCSNSKPVSVKPLISENAWTNNTQSGTDKDHSGGEEETTSKRRRRSRWDPQPDSNDQSGGEAGGGTKKRKSRWADDEPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLDAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESSIKQTNTLAIGSGNSGSNPPWANNSGSTGGTSQAGLGANPVKKEIDDTNLYIGYLPPTLDDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADIQMANNAIMAMNGYRLEGRTIAVRVAGKPPQPTVPPGPPASAMPTYPISSQPVGAYPSQQYAAGGPLGAAPPGSYASAPVPWGPPVPPPYAPYAPPPPGSTMYPPIQGQSIPPYGIQYPPVQTAPPGAPSQPAASSESQQSFPPGVQSDSSTSTQSTSANIYGSSIPSMPPTAQPTYATSYGYPPYYGTVPPPPPPPAPAPIPTSDHMPWATNPSVPPPPSTTEKTTYGADQSQSIGNVPWATNPPMPPPSSTAEKTTYGADSEYEKFMAEMK 828
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pral4725g00008 828 Pfam KH domain 283 331 IPR004088 GO:0003723
Pral4725g00008 828 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 505 583 IPR000504 GO:0003723
Pral4725g00008 828 Pfam Splicing factor 1 helix-hairpin domain 157 264 IPR032570 -
Pral4725g00008 828 FunFam splicing factor-like protein 1 485 587 - -
Pral4725g00008 828 FunFam splicing factor-like protein 1 260 388 - -
Pral4725g00008 828 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 268 394 IPR036612 GO:0003723
Pral4725g00008 828 MobiDBLite consensus disorder prediction 752 818 - -
Pral4725g00008 828 MobiDBLite consensus disorder prediction 1 171 - -
Pral4725g00008 828 FunFam splicing factor 1 388 441 - -
Pral4725g00008 828 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 507 576 IPR000504 GO:0003723
Pral4725g00008 828 ProSiteProfiles Zinc finger CCHC-type profile. 390 404 IPR001878 GO:0003676|GO:0008270
Pral4725g00008 828 MobiDBLite consensus disorder prediction 151 167 - -
Pral4725g00008 828 MobiDBLite consensus disorder prediction 683 728 - -
Pral4725g00008 828 Gene3D - 388 441 - -
Pral4725g00008 828 SMART rrm1_1 506 579 IPR000504 GO:0003723
Pral4725g00008 828 MobiDBLite consensus disorder prediction 313 333 - -
Pral4725g00008 828 SUPERFAMILY RNA-binding domain, RBD 501 595 IPR035979 GO:0003676
Pral4725g00008 828 MobiDBLite consensus disorder prediction 777 796 - -
Pral4725g00008 828 Gene3D K Homology domain, type 1 265 387 IPR036612 GO:0003723
Pral4725g00008 828 PANTHER RNA-BINDING PROTEIN RELATED 121 626 IPR045071 -
Pral4725g00008 828 Gene3D - 474 580 IPR012677 -
Pral4725g00008 828 SMART kh_6 268 360 IPR004087 GO:0003676
Pral4725g00008 828 SMART c2hcfinal6 389 405 IPR001878 GO:0003676|GO:0008270
Pral4725g00008 828 SMART c2hcfinal6 415 431 IPR001878 GO:0003676|GO:0008270
Pral4725g00008 828 MobiDBLite consensus disorder prediction 117 139 - -
Pral4725g00008 828 MobiDBLite consensus disorder prediction 34 116 - -
Pral4725g00008 828 MobiDBLite consensus disorder prediction 204 223 - -
Pral4725g00008 828 CDD KH-I_BBP 267 360 - -
Pral4725g00008 828 MobiDBLite consensus disorder prediction 464 492 - -
Pral4725g00008 828 MobiDBLite consensus disorder prediction 464 496 - -
Pral4725g00008 828 MobiDBLite consensus disorder prediction 656 728 - -
Pral4725g00008 828 ProSiteProfiles Type-1 KH domain profile. 283 355 - -
Pral4725g00008 828 ProSiteProfiles Zinc finger CCHC-type profile. 416 430 IPR001878 GO:0003676|GO:0008270
Pral4725g00008 828 Gene3D - 182 260 IPR047086 -
Pral4725g00008 828 SUPERFAMILY Retrovirus zinc finger-like domains 386 432 IPR036875 GO:0003676|GO:0008270
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pral4725g00008 Pral-Chr4725 147767 152510 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4725g00008 505 636 Eukaryotic Initiation Factors Gene Family AT3G16380 29.932 5.16e-11 64.3
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4725g00008 K13095 - qsa:O6P43_001652 1147.11