Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pral4725g00008 | ATGGACGCTCTTGAATCGAACCCTAATCCTTCTCCATTTCTTCCGTCCGAAACAGTCGTTTCGTACGATCATAACCCTGCTCCTCCGCCCCCGGAGAGCTTGGCATCGGATTTGCAGACGACATATGAGCAAACTGCGAACTCCGATTATCAAAACTCTTCGAAAACCCTTGCTTCGGATGGTCCAAACGTTAACGGTCAACCCCCGTCTGCTACTGGGAATGGATACGAGAACGGACTGGATAGCAGTCAGGGCGGTGCCGATAGCTGTAGCAATTCGAAGCCTGTGAGTGTGAAGCCGTTGATTTCTGAAAACGCGTGGACGAATAATACACAGAGTGGCACCGACAAGGATCACTCTGGTGGGGAAGAGGAAACTACAAGCAAACGTCGCCGCCGTAGTCGATGGGACCCGCAACCTGATTCCAATGATCAGAGTGGTGGTGAAGCCGGTGGCGGAACGAAGAAGAGGAAGTCACGATGGGCCGATGATGAGCCGAAGCCGGTGATTCAGCTTCCCGATTTCATGGGCGGTATTGAGTTTGATCCTGAAATTCAAGCTTTGAATAGTAGGCTTCTTGAGATCAGTCGAATGCTGCAATCAGGTTTGCCTTTAGATGATCGCCCTGAAGGTGCTAGATCTCCTTCACCTGAACCGATATATGATAACATGGGAATTAGAATTAACACTAGAGAATATCGTGCCCGTGAAAGATTGCAAAAGGAGAGGCAAGAAATCATTTCTCAGATTATCAAGAAAAACCCCGCATTCAAGCCACCCGCCGATTATAGGCCACCGAAGCTTCAGAAGAAGCTGTACATACCAATGAAAGAATATCCTGGTTACAACTTTATAGGGCTTATTATTGGTCCTCGAGGCAACACACAGAAGCGCATGGAAAGAGAAACTGGTGCTAAAATTGTGATTCGAGGTAAAGGGTCAGTGAAAGAGGGTAGACTGCAACAGAAGAGGGATTTGAAACCTGACCCTTCAGAGAATGAAGATTTGCATGTTCTTGTGGAGGCAGAAACACAAGAATCACTTGATGCTGCCGCAGGCATGGTGGAGAAACTCTTGCAGCCTGTGGATGAGGTGTTGAATGAGCATAAGAGGCAACAGCTTAGAGAACTTGCGGCCTTGAATGGTACAATTAGGGATGAAGAATATTGCCGGCTGTGTGGTGAACCTGGCCATCGCCAATATGCATGCCCTACGCGCACTTCTACATTTAAGAGTGAAGTGGTCTGTAAGCATTGTGGGGATGGTGGTCACCCAAGCATAGACTGTCCAGTGAAGGGAGCCACAGGCAAGAAGATGGATGACGAATATCAGAACTTTTTGGCAGAGCTGGGAGGGACAGTTCCAGAATCATCTATAAAACAGACCAACACGTTGGCAATTGGTTCAGGCAATTCTGGAAGCAATCCTCCTTGGGCTAACAATTCTGGATCGACTGGCGGTACATCACAAGCTGGCTTAGGGGCTAATCCGGTTAAAAAGGAAATTGATGATACAAATTTGTACATTGGGTATTTGCCGCCTACTCTTGATGATGATGGTCTGATCCAATTGTTTCAACAATTTGGTGAGATTGTTATGGCAAAGGTTATAAAAGATCGGATGACTGGTTTGAGTAAAGGATATGGGTTTGTCAAGTATGCTGATATCCAAATGGCAAATAATGCAATTATGGCCATGAATGGCTATCGCCTTGAGGGTAGAACCATTGCAGTGAGAGTTGCTGGTAAGCCGCCTCAGCCTACTGTTCCTCCTGGTCCGCCAGCATCAGCCATGCCCACATATCCTATTTCAAGCCAGCCAGTTGGTGCCTATCCATCCCAACAATATGCTGCTGGTGGTCCTTTAGGCGCTGCACCCCCTGGAAGTTATGCCAGTGCCCCAGTTCCATGGGGACCTCCTGTTCCTCCACCTTATGCTCCTTATGCTCCTCCCCCTCCTGGATCAACTATGTACCCTCCTATTCAAGGTCAATCTATACCTCCATACGGTATTCAGTATCCTCCAGTCCAGACAGCCCCTCCAGGTGCCCCATCCCAGCCTGCAGCTTCTAGTGAATCACAGCAGAGTTTCCCTCCAGGAGTGCAGTCTGACAGCAGCACTTCTACTCAATCTACGTCGGCCAATATTTATGGGAGTTCAATACCTTCTATGCCACCAACTGCTCAACCTACATATGCTACATCTTATGGTTATCCGCCTTACTATGGTACAGTTCCCCCTCCACCTCCCCCGCCTGCCCCTGCACCTATCCCGACTTCAGACCACATGCCTTGGGCTACCAATCCTTCTGTGCCGCCGCCTCCATCAACTACAGAGAAGACAACGTATGGTGCAGATCAATCTCAGAGCATAGGAAATGTGCCTTGGGCCACAAATCCTCCAATGCCACCCCCTTCTTCAACTGCAGAGAAGACAACATATGGTGCAGATTCGGAGTATGAGAAATTCATGGCAGAGATGAAATGA | 2487 | 0.4845 | MDALESNPNPSPFLPSETVVSYDHNPAPPPPESLASDLQTTYEQTANSDYQNSSKTLASDGPNVNGQPPSATGNGYENGLDSSQGGADSCSNSKPVSVKPLISENAWTNNTQSGTDKDHSGGEEETTSKRRRRSRWDPQPDSNDQSGGEAGGGTKKRKSRWADDEPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLDAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESSIKQTNTLAIGSGNSGSNPPWANNSGSTGGTSQAGLGANPVKKEIDDTNLYIGYLPPTLDDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADIQMANNAIMAMNGYRLEGRTIAVRVAGKPPQPTVPPGPPASAMPTYPISSQPVGAYPSQQYAAGGPLGAAPPGSYASAPVPWGPPVPPPYAPYAPPPPGSTMYPPIQGQSIPPYGIQYPPVQTAPPGAPSQPAASSESQQSFPPGVQSDSSTSTQSTSANIYGSSIPSMPPTAQPTYATSYGYPPYYGTVPPPPPPPAPAPIPTSDHMPWATNPSVPPPPSTTEKTTYGADQSQSIGNVPWATNPPMPPPSSTAEKTTYGADSEYEKFMAEMK | 828 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pral4725g00008 | 828 | Pfam | KH domain | 283 | 331 | IPR004088 | GO:0003723 | |
Pral4725g00008 | 828 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 505 | 583 | IPR000504 | GO:0003723 | |
Pral4725g00008 | 828 | Pfam | Splicing factor 1 helix-hairpin domain | 157 | 264 | IPR032570 | - | |
Pral4725g00008 | 828 | FunFam | splicing factor-like protein 1 | 485 | 587 | - | - | |
Pral4725g00008 | 828 | FunFam | splicing factor-like protein 1 | 260 | 388 | - | - | |
Pral4725g00008 | 828 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 268 | 394 | IPR036612 | GO:0003723 | |
Pral4725g00008 | 828 | MobiDBLite | consensus disorder prediction | 752 | 818 | - | - | |
Pral4725g00008 | 828 | MobiDBLite | consensus disorder prediction | 1 | 171 | - | - | |
Pral4725g00008 | 828 | FunFam | splicing factor 1 | 388 | 441 | - | - | |
Pral4725g00008 | 828 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 507 | 576 | IPR000504 | GO:0003723 | |
Pral4725g00008 | 828 | ProSiteProfiles | Zinc finger CCHC-type profile. | 390 | 404 | IPR001878 | GO:0003676|GO:0008270 | |
Pral4725g00008 | 828 | MobiDBLite | consensus disorder prediction | 151 | 167 | - | - | |
Pral4725g00008 | 828 | MobiDBLite | consensus disorder prediction | 683 | 728 | - | - | |
Pral4725g00008 | 828 | Gene3D | - | 388 | 441 | - | - | |
Pral4725g00008 | 828 | SMART | rrm1_1 | 506 | 579 | IPR000504 | GO:0003723 | |
Pral4725g00008 | 828 | MobiDBLite | consensus disorder prediction | 313 | 333 | - | - | |
Pral4725g00008 | 828 | SUPERFAMILY | RNA-binding domain, RBD | 501 | 595 | IPR035979 | GO:0003676 | |
Pral4725g00008 | 828 | MobiDBLite | consensus disorder prediction | 777 | 796 | - | - | |
Pral4725g00008 | 828 | Gene3D | K Homology domain, type 1 | 265 | 387 | IPR036612 | GO:0003723 | |
Pral4725g00008 | 828 | PANTHER | RNA-BINDING PROTEIN RELATED | 121 | 626 | IPR045071 | - | |
Pral4725g00008 | 828 | Gene3D | - | 474 | 580 | IPR012677 | - | |
Pral4725g00008 | 828 | SMART | kh_6 | 268 | 360 | IPR004087 | GO:0003676 | |
Pral4725g00008 | 828 | SMART | c2hcfinal6 | 389 | 405 | IPR001878 | GO:0003676|GO:0008270 | |
Pral4725g00008 | 828 | SMART | c2hcfinal6 | 415 | 431 | IPR001878 | GO:0003676|GO:0008270 | |
Pral4725g00008 | 828 | MobiDBLite | consensus disorder prediction | 117 | 139 | - | - | |
Pral4725g00008 | 828 | MobiDBLite | consensus disorder prediction | 34 | 116 | - | - | |
Pral4725g00008 | 828 | MobiDBLite | consensus disorder prediction | 204 | 223 | - | - | |
Pral4725g00008 | 828 | CDD | KH-I_BBP | 267 | 360 | - | - | |
Pral4725g00008 | 828 | MobiDBLite | consensus disorder prediction | 464 | 492 | - | - | |
Pral4725g00008 | 828 | MobiDBLite | consensus disorder prediction | 464 | 496 | - | - | |
Pral4725g00008 | 828 | MobiDBLite | consensus disorder prediction | 656 | 728 | - | - | |
Pral4725g00008 | 828 | ProSiteProfiles | Type-1 KH domain profile. | 283 | 355 | - | - | |
Pral4725g00008 | 828 | ProSiteProfiles | Zinc finger CCHC-type profile. | 416 | 430 | IPR001878 | GO:0003676|GO:0008270 | |
Pral4725g00008 | 828 | Gene3D | - | 182 | 260 | IPR047086 | - | |
Pral4725g00008 | 828 | SUPERFAMILY | Retrovirus zinc finger-like domains | 386 | 432 | IPR036875 | GO:0003676|GO:0008270 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pral4725g00008 | Pral-Chr4725 | 147767 | 152510 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pral4725g00008 | 505 | 636 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 29.932 | 5.16e-11 | 64.3 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pral4725g00008 | K13095 | - | qsa:O6P43_001652 | 1147.11 |