Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4719g00018 ATGTGTGGAGGTGCTATTATCTCCGACTTCATTCCGGCAGCTGCTGCTGCGGCGGCGGCCGGGAGGGGGAGGTCTCGCCGGCTCACCGCCGATTACCTGTGGCCAGATTTGAATAAGCTTGGGTCTGGTGGGAGGTTTTCCAAGCCACTGAAGTCTGAAGCTGTCATCGACTTGGACGATGATTTTGAAGCTGATTTCAGGGAATTCAAGGATGATTCCGATATTGATGTGGATGAAGAGGATGATGTCAAACCCTTTGCTTCCTCCGCCACTAAGCCCTCTAAGAAGCCCCTGTCCCGTGGATCTGCTACTGCGAAAGCTGATAAATCTGCTGGGCAAGCTGAGAAGTCTTTGAAAAGGAGGAGGAAGAACCAATACAGGGGAATCCGCCAGCGTCCATGGGGTAAGTGGGCAGCTGAGATCCGTGACCCAAGGAAGGGGGTTCGTGTCTGGCTCGGAACGTTCAACACTGCTGAAGAAGCTGCAAGAGCTTATGATGCCGAGGCAAGAAGGATCCGCGGCAAGAAAGCAAAGGTCAACTTCCCTGATGAGGTCTCAGGCACTTCATCAAAGCGTCTCAAGACTAAAGTCGAGAAGCCTCTTCCAAAGACCAATCTGAACTCTGCTCAACCCAATTCAACCCAAAACTTCAACGCTGGAACCAATCTGGAGGACTATTACTACTCCATGGGGCTGATGGAACAGAAACCACAGATTAACCAGTATGCTGCTGCTGCTGCTAACATGGGATCCCTCCCTGAGACTAACAATGGGGTCCCGTCACTGTCATCATCTGATGATGTCACTGTCTATTTCAGTTCTGATCAGGCGAGCAACTCATTCGACTACTCTGATTTCGGATGGGGCGAACAGGCTCCAAAGACCCCAGAAATCTCATCCATGCTTTCTGGTGAATCTCAGTATCTGCAAGATGCCAACCAGAACAACAACAACACCAACATGCAATACTCAAACTCTGAGAATGTGGTACCTGCTGGAAATGGTTCTGGGAAGACCCTATCGGATGAACTCGCTGACATTGAAACCCAACTGAATTTCTTCCAGACACCTTATCTTGAAGGAAGCTGGGATGATGCTTCCCTAGGAGCCCTGCTCAGTGGAGACGCAACCCAGGATGGTGCTAACCCAATGAGCCTTTGGAGCTTTGATGACCTTCCTCCATCCATGATGGGGGGAGTTTACTGA 1206 0.5058 MCGGAIISDFIPAAAAAAAAGRGRSRRLTADYLWPDLNKLGSGGRFSKPLKSEAVIDLDDDFEADFREFKDDSDIDVDEEDDVKPFASSATKPSKKPLSRGSATAKADKSAGQAEKSLKRRRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPDEVSGTSSKRLKTKVEKPLPKTNLNSAQPNSTQNFNAGTNLEDYYYSMGLMEQKPQINQYAAAAANMGSLPETNNGVPSLSSSDDVTVYFSSDQASNSFDYSDFGWGEQAPKTPEISSMLSGESQYLQDANQNNNNTNMQYSNSENVVPAGNGSGKTLSDELADIETQLNFFQTPYLEGSWDDASLGALLSGDATQDGANPMSLWSFDDLPPSMMGGVY 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4719g00018 401 PRINTS Ethylene responsive element binding protein signature 148 164 IPR001471 GO:0003700|GO:0006355
Pral4719g00018 401 PRINTS Ethylene responsive element binding protein signature 126 137 IPR001471 GO:0003700|GO:0006355
Pral4719g00018 401 ProSiteProfiles AP2/ERF domain profile. 125 182 IPR001471 GO:0003700|GO:0006355
Pral4719g00018 401 PANTHER DNA-BINDING DOMAIN 94 293 IPR044808 GO:0003700|GO:0009873
Pral4719g00018 401 FunFam Ethylene-responsive transcription factor 2 124 183 - -
Pral4719g00018 401 SUPERFAMILY DNA-binding domain 125 184 IPR016177 GO:0003677
Pral4719g00018 401 Coils Coil 309 329 - -
Pral4719g00018 401 SMART rav1_2 125 188 IPR001471 GO:0003700|GO:0006355
Pral4719g00018 401 CDD AP2 125 183 IPR001471 GO:0003700|GO:0006355
Pral4719g00018 401 Pfam AP2 domain 125 174 IPR001471 GO:0003700|GO:0006355
Pral4719g00018 401 Gene3D AP2/ERF domain 124 183 IPR036955 GO:0003700|GO:0006355
Pral4719g00018 401 MobiDBLite consensus disorder prediction 80 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4719g00018 Pral-Chr4719 72830 75767 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4719g00018 1 401 AP2-EREBP Transcription Factor Family AT1G53910 46.190 8.74e-76 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral4719g00018 AP2 2.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4719g00018 K09286 - cave:132186622 418.313