Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4717g00021 ATGCAGAATCACAGGCTGAAGCAGCAGCAACAAGCTTTGATGCAGCAAGCTCTTCTTCAGCAACAGTCTCTGTACCACCCTGGCCTCCTAGCTCCTCCCCAGATTGAACCAATTCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTACGTTGGGAATATACATACACAGGTAACTGAACCACTTCTCCAAGAAGTTTTTGCAAGTACTGGCCCAGTTGAAGGTTGTAAACTTATCAGAAAGGAGAAGTCTTCCTATGGATTCATCCATTACTTTGATCGAAGATCAGCTGCTCTTGCCATATTAACTCTCAATGGAAGGCACTTATTTGGGCAGCCCATCAAAGTTAACTGGGCATATGCTAGCGGTCAGAGAGAGGATACATCAGGTCATTACAACATATTTGTTGGTGATCTCAGCCCTGAGGTCACTGATGCTACATTGTTTGCTTGCTTTTCTGTTTACCCCAGTTGTTCAGATGCAAGGGTAATGTGGGATCAGAAGACTGGGCGTTCTAGGGGGTTTGGTTTTGTTTCATTTCGTAATCAACAGGATGCTCAAAGCGCAATAAATGATTTGACTGGCAAGTGGCTTGGTAGTAGGCAAATTCGCTGCAACTGGGCAACAAAAGGTGCTGGTTCCAATGAAGACAAGCAAAACTCTGACACTAAAAGTGTAGTTGAACTAACAAATGGCTCATCAGATGGTAAAGAGACAACTAACAGTGATGCTCCAGAGAACAATCCTCAATATACTACTGTTTATGTGGGCAATCTTGCTCCGGAGGTTGCCCAGCTTGATCTCCATCGCCACTTCCATGCTCTTGGGGCAGGAGTGATAGAGGAGGTTCGTGTCCAAAGGGATAAAGGGTTTGGATTTGTGAGGTATAGTACTCATGCCGAAGCAGCTCTGGCTATTCAGCTGGGAAATACCCAGTCTATTCTCTGCGGCAAACTAATTAAGTGCTCCTGGGGCAGCAAGCCCACTCCACCAGGAACCGCATCAAATCCTCTGCCCCCACCTGCAGCTGCCACTCTGCCAGGCCTCTCTGCAACTGATCTTCTGGCATATGAGAGACAGTTGGCGATGAGCAAGATGGGTGGTGTACATGCTCTTATGCATCCCCAAGGACAGCACCCTCTTAAACAGGCGGCAATTGGAGGAAGCCAGGCAATATATGATGGTGGGTTTCAGAATGTTGCTGCTGCCCAACAAATGATGTACTACCAGTAA 1251 0.47 MQNHRLKQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFASTGPVEGCKLIRKEKSSYGFIHYFDRRSAALAILTLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGSNEDKQNSDTKSVVELTNGSSDGKETTNSDAPENNPQYTTVYVGNLAPEVAQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQLGNTQSILCGKLIKCSWGSKPTPPGTASNPLPPPAAATLPGLSATDLLAYERQLAMSKMGGVHALMHPQGQHPLKQAAIGGSQAIYDGGFQNVAAAQQMMYYQ 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4717g00021 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 258 333 IPR000504 GO:0003723
Pral4717g00021 416 FunFam oligouridylate-binding protein 1B-like isoform X2 1 135 - -
Pral4717g00021 416 FunFam oligouridylate-binding protein 1-like isoform X2 136 231 - -
Pral4717g00021 416 CDD RRM2_PUB1 137 216 - -
Pral4717g00021 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 260 317 IPR000504 GO:0003723
Pral4717g00021 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 55 121 IPR000504 GO:0003723
Pral4717g00021 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 210 IPR000504 GO:0003723
Pral4717g00021 416 MobiDBLite consensus disorder prediction 215 257 - -
Pral4717g00021 416 Gene3D - 134 231 IPR012677 -
Pral4717g00021 416 Gene3D - 1 133 IPR012677 -
Pral4717g00021 416 SMART rrm1_1 259 329 IPR000504 GO:0003723
Pral4717g00021 416 SMART rrm1_1 54 123 IPR000504 GO:0003723
Pral4717g00021 416 SMART rrm1_1 139 212 IPR000504 GO:0003723
Pral4717g00021 416 SUPERFAMILY RNA-binding domain, RBD 37 131 IPR035979 GO:0003676
Pral4717g00021 416 CDD RRM1_PUB1 55 125 - -
Pral4717g00021 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 216 IPR000504 GO:0003723
Pral4717g00021 416 SUPERFAMILY RNA-binding domain, RBD 132 220 IPR035979 GO:0003676
Pral4717g00021 416 Gene3D - 236 337 IPR012677 -
Pral4717g00021 416 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 51 336 - -
Pral4717g00021 416 SUPERFAMILY RNA-binding domain, RBD 246 337 IPR035979 GO:0003676
Pral4717g00021 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 53 127 IPR000504 GO:0003723
Pral4717g00021 416 FunFam Oligouridylate-binding protein 1C 236 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4717g00021 Pral-Chr4717 156002 162059 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4717g00021 54 327 Eukaryotic Initiation Factors Gene Family AT3G16380 26.804 4.34e-18 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4717g00021 K13201 - gmx:100814415 779.245