Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pral4717g00021 | ATGCAGAATCACAGGCTGAAGCAGCAGCAACAAGCTTTGATGCAGCAAGCTCTTCTTCAGCAACAGTCTCTGTACCACCCTGGCCTCCTAGCTCCTCCCCAGATTGAACCAATTCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTACGTTGGGAATATACATACACAGGTAACTGAACCACTTCTCCAAGAAGTTTTTGCAAGTACTGGCCCAGTTGAAGGTTGTAAACTTATCAGAAAGGAGAAGTCTTCCTATGGATTCATCCATTACTTTGATCGAAGATCAGCTGCTCTTGCCATATTAACTCTCAATGGAAGGCACTTATTTGGGCAGCCCATCAAAGTTAACTGGGCATATGCTAGCGGTCAGAGAGAGGATACATCAGGTCATTACAACATATTTGTTGGTGATCTCAGCCCTGAGGTCACTGATGCTACATTGTTTGCTTGCTTTTCTGTTTACCCCAGTTGTTCAGATGCAAGGGTAATGTGGGATCAGAAGACTGGGCGTTCTAGGGGGTTTGGTTTTGTTTCATTTCGTAATCAACAGGATGCTCAAAGCGCAATAAATGATTTGACTGGCAAGTGGCTTGGTAGTAGGCAAATTCGCTGCAACTGGGCAACAAAAGGTGCTGGTTCCAATGAAGACAAGCAAAACTCTGACACTAAAAGTGTAGTTGAACTAACAAATGGCTCATCAGATGGTAAAGAGACAACTAACAGTGATGCTCCAGAGAACAATCCTCAATATACTACTGTTTATGTGGGCAATCTTGCTCCGGAGGTTGCCCAGCTTGATCTCCATCGCCACTTCCATGCTCTTGGGGCAGGAGTGATAGAGGAGGTTCGTGTCCAAAGGGATAAAGGGTTTGGATTTGTGAGGTATAGTACTCATGCCGAAGCAGCTCTGGCTATTCAGCTGGGAAATACCCAGTCTATTCTCTGCGGCAAACTAATTAAGTGCTCCTGGGGCAGCAAGCCCACTCCACCAGGAACCGCATCAAATCCTCTGCCCCCACCTGCAGCTGCCACTCTGCCAGGCCTCTCTGCAACTGATCTTCTGGCATATGAGAGACAGTTGGCGATGAGCAAGATGGGTGGTGTACATGCTCTTATGCATCCCCAAGGACAGCACCCTCTTAAACAGGCGGCAATTGGAGGAAGCCAGGCAATATATGATGGTGGGTTTCAGAATGTTGCTGCTGCCCAACAAATGATGTACTACCAGTAA | 1251 | 0.47 | MQNHRLKQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFASTGPVEGCKLIRKEKSSYGFIHYFDRRSAALAILTLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGSNEDKQNSDTKSVVELTNGSSDGKETTNSDAPENNPQYTTVYVGNLAPEVAQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQLGNTQSILCGKLIKCSWGSKPTPPGTASNPLPPPAAATLPGLSATDLLAYERQLAMSKMGGVHALMHPQGQHPLKQAAIGGSQAIYDGGFQNVAAAQQMMYYQ | 416 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pral4717g00021 | 416 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 258 | 333 | IPR000504 | GO:0003723 | |
Pral4717g00021 | 416 | FunFam | oligouridylate-binding protein 1B-like isoform X2 | 1 | 135 | - | - | |
Pral4717g00021 | 416 | FunFam | oligouridylate-binding protein 1-like isoform X2 | 136 | 231 | - | - | |
Pral4717g00021 | 416 | CDD | RRM2_PUB1 | 137 | 216 | - | - | |
Pral4717g00021 | 416 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 260 | 317 | IPR000504 | GO:0003723 | |
Pral4717g00021 | 416 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 55 | 121 | IPR000504 | GO:0003723 | |
Pral4717g00021 | 416 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 140 | 210 | IPR000504 | GO:0003723 | |
Pral4717g00021 | 416 | MobiDBLite | consensus disorder prediction | 215 | 257 | - | - | |
Pral4717g00021 | 416 | Gene3D | - | 134 | 231 | IPR012677 | - | |
Pral4717g00021 | 416 | Gene3D | - | 1 | 133 | IPR012677 | - | |
Pral4717g00021 | 416 | SMART | rrm1_1 | 259 | 329 | IPR000504 | GO:0003723 | |
Pral4717g00021 | 416 | SMART | rrm1_1 | 54 | 123 | IPR000504 | GO:0003723 | |
Pral4717g00021 | 416 | SMART | rrm1_1 | 139 | 212 | IPR000504 | GO:0003723 | |
Pral4717g00021 | 416 | SUPERFAMILY | RNA-binding domain, RBD | 37 | 131 | IPR035979 | GO:0003676 | |
Pral4717g00021 | 416 | CDD | RRM1_PUB1 | 55 | 125 | - | - | |
Pral4717g00021 | 416 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 138 | 216 | IPR000504 | GO:0003723 | |
Pral4717g00021 | 416 | SUPERFAMILY | RNA-binding domain, RBD | 132 | 220 | IPR035979 | GO:0003676 | |
Pral4717g00021 | 416 | Gene3D | - | 236 | 337 | IPR012677 | - | |
Pral4717g00021 | 416 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 51 | 336 | - | - | |
Pral4717g00021 | 416 | SUPERFAMILY | RNA-binding domain, RBD | 246 | 337 | IPR035979 | GO:0003676 | |
Pral4717g00021 | 416 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 53 | 127 | IPR000504 | GO:0003723 | |
Pral4717g00021 | 416 | FunFam | Oligouridylate-binding protein 1C | 236 | 337 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pral4717g00021 | Pral-Chr4717 | 156002 | 162059 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pral4717g00021 | 54 | 327 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 26.804 | 4.34e-18 | 84.3 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pral4717g00021 | K13201 | - | gmx:100814415 | 779.245 |