Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pral4717g00020 | ATGCAGAATCACAGGCTGAAGCAGCAGCAACAAGCTTTGATGCAGCAAGCTCTTCTTCAGCAACAGTCTCTGTACCACCCTGGCCTCCTAGCTCCTCCCCAGATTGAACCAATTCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTACGTTGGGAATATACATACACAGGTAACTGAACCACTTCTCCAAGAAGTTTTTGCAAGTACTGGCCCAGTTGAAGGTTGTAAACTTATCAGAAAGGAGAAGTCTTCCTATGGATTCATCCATTACTTTGATCGAAGATCAGCTGCTCTTGCCATATTAACTCTCAATGGAAGGCACTTATTTGGGCAGCCCATCAAAGTTAACTGGGCATATGCTAGCGGTCAGAGAGAGGATACATCAGGTCATTACAACATATTTGTTGGTGATCTCAGCCCTGAGGTCACTGATGCTACATTGTTTGCTTGCTTTTCTGTTTACCCCAGTTGTTCAGATGCAAGGGTAATGTGGGATCAGAAGACTGGGCGTTCTAGGGGGTTTGGTTTTGTTTCATTTCGTAATCAACAGGATGCTCAAAGCGCAATAAATGATTTGACTGGCAAGTGGCTTGGTAGTAGGCAAATTCGCTGCAACTGGGCAACAAAAGGTGCTGGTTCCAATGAAGACAAGCAAAACTCTGACACTAAAAGTGTAGTTGAACTAACAAATGGCTCATCAGAAGATGGTAAAGAGACAACTAACAGTGATGCTCCAGAGAACAATCCTCAATATACTACTGTTTATGTGGGCAATCTTGCTCCGGAGGTTGCCCAGCTTGATCTCCATCGCCACTTCCATGCTCTTGGGGCAGGAGTGATAGAGGAGGTTCGTGTCCAAAGGGATAAAGGGTTTGGATTTGTGAGGTATAGTACTCATGCCGAAGCAGCTCTGGCTATTCAGCTGGGAAATACCCAGTCTATTCTCTGCGGCAAACTAATTAAGTGCTCCTGGGGCAGCAAGCCCACTCCACCAGGAACCGCATCAAATCCTCTGCCCCCACCTGCAGCTGCCACTCTGCCAGGCCTCTCTGCAACTGATCTTCTGGCATATGAGAGACAGTTGGCGATGAGCAAGATGGGTGGTGTACATGCTCTTATGCATCCCCAAGGACAGCACCCTCTTAAACAGGCGGCAATTGGAGGAAGCCAGGCAATATATGATGGTGGGTTTCAGAATGTTGCTGCTGCCCAACAAATGATGTACTACCAGTAA | 1254 | 0.4697 | MQNHRLKQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFASTGPVEGCKLIRKEKSSYGFIHYFDRRSAALAILTLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGSNEDKQNSDTKSVVELTNGSSEDGKETTNSDAPENNPQYTTVYVGNLAPEVAQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQLGNTQSILCGKLIKCSWGSKPTPPGTASNPLPPPAAATLPGLSATDLLAYERQLAMSKMGGVHALMHPQGQHPLKQAAIGGSQAIYDGGFQNVAAAQQMMYYQ | 417 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pral4717g00020 | 417 | SMART | rrm1_1 | 260 | 330 | IPR000504 | GO:0003723 | |
Pral4717g00020 | 417 | SMART | rrm1_1 | 54 | 123 | IPR000504 | GO:0003723 | |
Pral4717g00020 | 417 | SMART | rrm1_1 | 139 | 212 | IPR000504 | GO:0003723 | |
Pral4717g00020 | 417 | FunFam | oligouridylate-binding protein 1B-like isoform X2 | 1 | 135 | - | - | |
Pral4717g00020 | 417 | CDD | RRM2_PUB1 | 137 | 216 | - | - | |
Pral4717g00020 | 417 | FunFam | Oligouridylate-binding protein 1C | 236 | 338 | - | - | |
Pral4717g00020 | 417 | SUPERFAMILY | RNA-binding domain, RBD | 37 | 131 | IPR035979 | GO:0003676 | |
Pral4717g00020 | 417 | Gene3D | - | 239 | 338 | IPR012677 | - | |
Pral4717g00020 | 417 | CDD | RRM1_PUB1 | 55 | 125 | - | - | |
Pral4717g00020 | 417 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 138 | 216 | IPR000504 | GO:0003723 | |
Pral4717g00020 | 417 | SUPERFAMILY | RNA-binding domain, RBD | 132 | 220 | IPR035979 | GO:0003676 | |
Pral4717g00020 | 417 | Gene3D | - | 135 | 238 | IPR012677 | - | |
Pral4717g00020 | 417 | MobiDBLite | consensus disorder prediction | 215 | 258 | - | - | |
Pral4717g00020 | 417 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 51 | 337 | - | - | |
Pral4717g00020 | 417 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 259 | 334 | IPR000504 | GO:0003723 | |
Pral4717g00020 | 417 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 261 | 318 | IPR000504 | GO:0003723 | |
Pral4717g00020 | 417 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 55 | 121 | IPR000504 | GO:0003723 | |
Pral4717g00020 | 417 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 140 | 210 | IPR000504 | GO:0003723 | |
Pral4717g00020 | 417 | SUPERFAMILY | RNA-binding domain, RBD | 247 | 338 | IPR035979 | GO:0003676 | |
Pral4717g00020 | 417 | Gene3D | - | 1 | 134 | IPR012677 | - | |
Pral4717g00020 | 417 | FunFam | oligouridylate-binding protein 1-like isoform X2 | 136 | 231 | - | - | |
Pral4717g00020 | 417 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 53 | 127 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pral4717g00020 | Pral-Chr4717 | 156002 | 162059 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pral4717g00020 | 136 | 327 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 28.000 | 3.28e-13 | 69.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pral4717g00020 | K13201 | - | gmx:100781227 | 778.089 |