Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4717g00019 ATGCAGAATCACAGGCTGAAGCAGCAGCAACAAGCTTTGATGCAGCAAGCTCTTCTTCAGCAACAGTCTCTGTACCACCCTGGCCTCCTAGCTCCTCCCCAGATTGAACCAATTCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTACGTTGGGAATATACATACACAGGTAACTGAACCACTTCTCCAAGAAGTTTTTGCAAGTACTGGCCCAGTTGAAGGTTGTAAACTTATCAGAAAGGAGAAGGTAGGTTTTGCATATGTATCTGGTTATGTTTTGTTTGGTTCATTTAGAGTATCGTCTGAGTTCAAGTTTTTCTTTGATGGCTTGGCATCTTTTATGCAGTCTTCCTATGGATTCATCCATTACTTTGATCGAAGATCAGCTGCTCTTGCCATATTAACTCTCAATGGAAGGCACTTATTTGGGCAGCCCATCAAAGTTAACTGGGCATATGCTAGCGGTCAGAGAGAGGATACATCAGGTCATTACAACATATTTGTTGGTGATCTCAGCCCTGAGGTCACTGATGCTACATTGTTTGCTTGCTTTTCTGTTTACCCCAGTTGTTCAGATGCAAGGGTAATGTGGGATCAGAAGACTGGGCGTTCTAGGGGGTTTGGTTTTGTTTCATTTCGTAATCAACAGGATGCTCAAAGCGCAATAAATGATTTGACTGGCAAGTGGCTTGGTAGTAGGCAAATTCGCTGCAACTGGGCAACAAAAGGTGCTGGTTCCAATGAAGACAAGCAAAACTCTGACACTAAAAGTGTAGTTGAACTAACAAATGGCTCATCAGATGGTAAAGAGACAACTAACAGTGATGCTCCAGAGAACAATCCTCAATATACTACTGTTTATGTGGGCAATCTTGCTCCGGAGGTTGCCCAGCTTGATCTCCATCGCCACTTCCATGCTCTTGGGGCAGGAGTGATAGAGGAGGTTCGTGTCCAAAGGGATAAAGGGTTTGGATTTGTGAGGTATAGTACTCATGCCGAAGCAGCTCTGGCTATTCAGCTGGGAAATACCCAGTCTATTCTCTGCGGCAAACTAATTAAGTGCTCCTGGGGCAGCAAGCCCACTCCACCAGGAACCGCATCAAATCCTCTGCCCCCACCTGCAGCTGCCACTCTGCCAGGCCTCTCTGCAACTGATCTTCTGGCATATGAGAGACAGTTGGCGATGAGCAAGATGGGTGGTGTACATGCTCTTATGCATCCCCAAGGACAGCACCCTCTTAAACAGGCGGCAATTGGAGGAAGCCAGGCAATATATGATGGTGGGTTTCAGAATGTTGCTGCTGCCCAACAAATGATGTACTACCAGTAA 1350 0.4615 MQNHRLKQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFASTGPVEGCKLIRKEKVGFAYVSGYVLFGSFRVSSEFKFFFDGLASFMQSSYGFIHYFDRRSAALAILTLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGSNEDKQNSDTKSVVELTNGSSDGKETTNSDAPENNPQYTTVYVGNLAPEVAQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQLGNTQSILCGKLIKCSWGSKPTPPGTASNPLPPPAAATLPGLSATDLLAYERQLAMSKMGGVHALMHPQGQHPLKQAAIGGSQAIYDGGFQNVAAAQQMMYYQ 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4717g00019 449 Gene3D - 169 269 IPR012677 -
Pral4717g00019 449 MobiDBLite consensus disorder prediction 248 290 - -
Pral4717g00019 449 Gene3D - 1 168 IPR012677 -
Pral4717g00019 449 SUPERFAMILY RNA-binding domain, RBD 165 253 IPR035979 GO:0003676
Pral4717g00019 449 SUPERFAMILY RNA-binding domain, RBD 14 164 IPR035979 GO:0003676
Pral4717g00019 449 Gene3D - 270 370 IPR012677 -
Pral4717g00019 449 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 171 249 IPR000504 GO:0003723
Pral4717g00019 449 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 51 369 - -
Pral4717g00019 449 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 53 160 IPR000504 GO:0003723
Pral4717g00019 449 CDD RRM2_PUB1 170 249 - -
Pral4717g00019 449 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 55 95 IPR000504 GO:0003723
Pral4717g00019 449 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 173 243 IPR000504 GO:0003723
Pral4717g00019 449 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 350 IPR000504 GO:0003723
Pral4717g00019 449 FunFam Oligouridylate-binding protein 1C 269 370 - -
Pral4717g00019 449 SMART rrm1_1 292 362 IPR000504 GO:0003723
Pral4717g00019 449 SMART rrm1_1 54 156 IPR000504 GO:0003723
Pral4717g00019 449 SMART rrm1_1 172 245 IPR000504 GO:0003723
Pral4717g00019 449 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 291 366 IPR000504 GO:0003723
Pral4717g00019 449 SUPERFAMILY RNA-binding domain, RBD 279 370 IPR035979 GO:0003676
Pral4717g00019 449 FunFam oligouridylate-binding protein 1-like isoform X2 169 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4717g00019 Pral-Chr4717 156002 162059 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4717g00019 48 367 Eukaryotic Initiation Factors Gene Family AT4G34110 26.807 1.60e-20 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4717g00019 K13201 - gmx:100814415 762.296