Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4717g00018 ATGCAGAATCACAGGCTGAAGCAGCAGCAACAAGCTTTGATGCAGCAAGCTCTTCTTCAGCAACAGTCTCTGTACCACCCTGGCCTCCTAGCTCCTCCCCAGATTGAACCAATTCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTACGTTGGGAATATACATACACAGGTAACTGAACCACTTCTCCAAGAAGTTTTTGCAAGTACTGGCCCAGTTGAAGGTTGTAAACTTATCAGAAAGGAGAAGGTAGGTTTTGCATATGTATCTGGTTATGTTTTGTTTGGTTCATTTAGAGTATCGTCTGAGTTCAAGTTTTTCTTTGATGGCTTGGCATCTTTTATGCAGTCTTCCTATGGATTCATCCATTACTTTGATCGAAGATCAGCTGCTCTTGCCATATTAACTCTCAATGGAAGGCACTTATTTGGGCAGCCCATCAAAGTTAACTGGGCATATGCTAGCGGTCAGAGAGAGGATACATCAGGTCATTACAACATATTTGTTGGTGATCTCAGCCCTGAGGTCACTGATGCTACATTGTTTGCTTGCTTTTCTGTTTACCCCAGTTGTTCAGATGCAAGGGTAATGTGGGATCAGAAGACTGGGCGTTCTAGGGGGTTTGGTTTTGTTTCATTTCGTAATCAACAGGATGCTCAAAGCGCAATAAATGATTTGACTGGCAAGTGGCTTGGTAGTAGGCAAATTCGCTGCAACTGGGCAACAAAAGGTGCTGGTTCCAATGAAGACAAGCAAAACTCTGACACTAAAAGTGTAGTTGAACTAACAAATGGCTCATCAGAAGATGGTAAAGAGACAACTAACAGTGATGCTCCAGAGAACAATCCTCAATATACTACTGTTTATGTGGGCAATCTTGCTCCGGAGGTTGCCCAGCTTGATCTCCATCGCCACTTCCATGCTCTTGGGGCAGGAGTGATAGAGGAGGTTCGTGTCCAAAGGGATAAAGGGTTTGGATTTGTGAGGTATAGTACTCATGCCGAAGCAGCTCTGGCTATTCAGCTGGGAAATACCCAGTCTATTCTCTGCGGCAAACTAATTAAGTGCTCCTGGGGCAGCAAGCCCACTCCACCAGGAACCGCATCAAATCCTCTGCCCCCACCTGCAGCTGCCACTCTGCCAGGCCTCTCTGCAACTGATCTTCTGGCATATGAGAGACAGTTGGCGATGAGCAAGATGGGTGGTGTACATGCTCTTATGCATCCCCAAGGACAGCACCCTCTTAAACAGGCGGCAATTGGAGGAAGCCAGGCAATATATGATGGTGGGTTTCAGAATGTTGCTGCTGCCCAACAAATGATGTACTACCAGTAA 1353 0.4612 MQNHRLKQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFASTGPVEGCKLIRKEKVGFAYVSGYVLFGSFRVSSEFKFFFDGLASFMQSSYGFIHYFDRRSAALAILTLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGSNEDKQNSDTKSVVELTNGSSEDGKETTNSDAPENNPQYTTVYVGNLAPEVAQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQLGNTQSILCGKLIKCSWGSKPTPPGTASNPLPPPAAATLPGLSATDLLAYERQLAMSKMGGVHALMHPQGQHPLKQAAIGGSQAIYDGGFQNVAAAQQMMYYQ 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4717g00018 450 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 55 95 IPR000504 GO:0003723
Pral4717g00018 450 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 173 243 IPR000504 GO:0003723
Pral4717g00018 450 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 294 351 IPR000504 GO:0003723
Pral4717g00018 450 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 51 370 - -
Pral4717g00018 450 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 171 249 IPR000504 GO:0003723
Pral4717g00018 450 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 53 160 IPR000504 GO:0003723
Pral4717g00018 450 SUPERFAMILY RNA-binding domain, RBD 165 253 IPR035979 GO:0003676
Pral4717g00018 450 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 292 367 IPR000504 GO:0003723
Pral4717g00018 450 CDD RRM2_PUB1 170 249 - -
Pral4717g00018 450 MobiDBLite consensus disorder prediction 248 291 - -
Pral4717g00018 450 SUPERFAMILY RNA-binding domain, RBD 280 371 IPR035979 GO:0003676
Pral4717g00018 450 Gene3D - 167 264 IPR012677 -
Pral4717g00018 450 Gene3D - 1 166 IPR012677 -
Pral4717g00018 450 SUPERFAMILY RNA-binding domain, RBD 14 164 IPR035979 GO:0003676
Pral4717g00018 450 Gene3D - 269 371 IPR012677 -
Pral4717g00018 450 FunFam Oligouridylate-binding protein 1C 269 371 - -
Pral4717g00018 450 SMART rrm1_1 293 363 IPR000504 GO:0003723
Pral4717g00018 450 SMART rrm1_1 54 156 IPR000504 GO:0003723
Pral4717g00018 450 SMART rrm1_1 172 245 IPR000504 GO:0003723
Pral4717g00018 450 FunFam oligouridylate-binding protein 1-like isoform X2 169 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4717g00018 Pral-Chr4717 156002 162059 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4717g00018 48 368 Eukaryotic Initiation Factors Gene Family AT4G34110 27.327 1.29e-20 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4717g00018 K13201 - gmx:100781227 761.14