Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4715g00033 ATGGGAGTTCTGCCACAACAACGTCATAATACAAAGCCATTGAGTTTCCAGTTTCAAGATCAGGATTCATCTTCTACTCAATCAACTGGTCAATCTTATCCAGAAGATGGTTCAGCTCAATCAGGTCAAATTTCTATCCGGTGTAGCAGTTCTTCTGCACGCTCAAAATGTGTTGATAGTGGAGGTGGTCTCATCAGGTCATCATTGGGGAGTCAGAGTTTTTGTTTTCCTCCTTTCCAAGTGGATCATAACCAATCAATTGCTCATATAGCATTTCGCCATGCTGAACCATACTTTGATGGTGTGCTTGCTGCTTATGGGCCACAGTCTAAGATTCATCAGGCCCAACTCATGGGATTAACTTCTGTTCGAGTTCCTCTTCCTTTTGATCTGACAGAAGAACCAATATACGTGAACGCAAAGCAGTACCATGCTATTCTGAGGCGTAGACAGTATCGTGCCAAACTCGAAGCACAGAACAAACTCACCAAAGCTCGGAAACCATATCTTCACGAGTCCCGGCATCTGCATGCATTAAGGAGGGCTAGAGGTTCTGGTGGTCGCTTTCTCAACAGCAAACAACTCCAGGAAGCAAGCCTCAAAACAGACAGTCTTGGCCTGAAAGTTTCGGAAGGTACCAGGTTGAACCTAGGTGGAAATATGTCGGAATCCAAAAATCATGCTGATGTAGGAAACTACAGAGATGGGGCATGCCCCACAGGTTCTGATATCACCAGTGCATCCAATAGTGATGGCATGTTCCAGCAACATGAGTCCAGCTTCAGGCTCTCTAGCTACCCTCCTCACATTGGATGGAGCATGCACGGCTACTCAGCTGAACCCGGCGCCCGTGGAAGTGGTGGCGGGAATCAACAGCACGTGTCTGTCCTCATGTGA 897 0.4693 MGVLPQQRHNTKPLSFQFQDQDSSSTQSTGQSYPEDGSAQSGQISIRCSSSSARSKCVDSGGGLIRSSLGSQSFCFPPFQVDHNQSIAHIAFRHAEPYFDGVLAAYGPQSKIHQAQLMGLTSVRVPLPFDLTEEPIYVNAKQYHAILRRRQYRAKLEAQNKLTKARKPYLHESRHLHALRRARGSGGRFLNSKQLQEASLKTDSLGLKVSEGTRLNLGGNMSESKNHADVGNYRDGACPTGSDITSASNSDGMFQQHESSFRLSSYPPHIGWSMHGYSAEPGARGSGGGNQQHVSVLM 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4715g00033 298 Gene3D - 132 193 - -
Pral4715g00033 298 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 134 189 IPR001289 GO:0003700|GO:0006355
Pral4715g00033 298 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 8 260 IPR001289 GO:0003700|GO:0006355
Pral4715g00033 298 MobiDBLite consensus disorder prediction 1 45 - -
Pral4715g00033 298 ProSitePatterns NF-YA/HAP2 subunit signature. 137 157 IPR018362 GO:0003677|GO:0016602
Pral4715g00033 298 MobiDBLite consensus disorder prediction 8 45 - -
Pral4715g00033 298 ProSiteProfiles NF-YA/HAP2 family profile. 132 192 IPR001289 GO:0003700|GO:0006355
Pral4715g00033 298 SMART cbf3 131 192 IPR001289 GO:0003700|GO:0006355
Pral4715g00033 298 PRINTS CCAAT-binding transcription factor subunit B signature 135 157 IPR001289 GO:0003700|GO:0006355
Pral4715g00033 298 PRINTS CCAAT-binding transcription factor subunit B signature 166 189 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4715g00033 Pral-Chr4715 164853 168946 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4715g00033 86 296 CCAAT-HAP2 Transcription Factor Family AT1G17590 49.770 7.18e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pral4715g00033 CBFB_NFYA 6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4715g00033 K08064 - gmx:100500765 347.051