Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4715g00028 ATGGACGGCGGAGCACAGTACAATCCTCGCACGGTGGAAGAGGTTTTTAGGGATTTCAAGGGAAGAAGAGCTGGACTTATAAAAGCCCTTACCACCGATGTTGAAGAATTCTACAACCAATGTGATCCTGAGAAAGAGAATTTGTGCTTGTATGGTTATCCTAGTGAGCAATGGGAAGTAAATTTACCTGCTGAAGAAGTTCCTCCAGAACTTCCAGAGCCTGTGCTGGGCATAAACTTTGCCAGGGATGGCATGCAGGAAAAAGACTGGTTATCTTTAGTTGCTGTCCACAGTGATGCATGGTTACTTGCTATCGCTTTCTATTTTGGAGCCAGATTTGGATTTGATAGAGCTGACAGGAAGCGACTTTTCAATATGATTAATGAACTACCAACGGTATTTGAAGTTGTTACGGGCACAGCAAAAAAACAAATTAAGGAGAAGTCTTCAGGTTCAAATCACAGTGGCAGTAAATCAAAGTCCAACTCTAAAGCGCGAGGTTCAGAATCTGTGGGAAAGCATTCAAAGGCTATGCAATCAAGAGACGAGGAAGAAGGACTGGATGAAGTAGATGAGGACGAACACGGAGAGACCTTGTGTGGGGCATGTGGTGAGAATTATGGGACTGATGAATTCTGGATTTGTTGTGACATCTGCGAAAAATGGTTTCATGGAAAATGTGTGAAGATCACTCCAGCTAGGGCAGAGCATATCAAACAATACAAATGCCCGTCATGCAGTAACAAGAGAGCTCGTCCCTGA 762 0.437 MDGGAQYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYNQCDPEKENLCLYGYPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLAIAFYFGARFGFDRADRKRLFNMINELPTVFEVVTGTAKKQIKEKSSGSNHSGSKSKSNSKARGSESVGKHSKAMQSRDEEEGLDEVDEDEHGETLCGACGENYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4715g00028 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Pral4715g00028 253 SMART PHD_3 199 247 IPR001965 -
Pral4715g00028 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 248 IPR013083 -
Pral4715g00028 253 PANTHER CPG BINDING PROTEIN 8 252 IPR045104 GO:0006355|GO:0042393
Pral4715g00028 253 SUPERFAMILY FYVE/PHD zinc finger 191 250 IPR011011 -
Pral4715g00028 253 MobiDBLite consensus disorder prediction 145 193 - -
Pral4715g00028 253 MobiDBLite consensus disorder prediction 145 166 - -
Pral4715g00028 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Pral4715g00028 253 CDD PHD_AL_plant 199 249 IPR044104 -
Pral4715g00028 253 MobiDBLite consensus disorder prediction 167 183 - -
Pral4715g00028 253 FunFam PHD finger alfin-like protein 192 248 - -
Pral4715g00028 253 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Pral4715g00028 253 Pfam PHD-finger 200 249 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4715g00028 Pral-Chr4715 159391 164106 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4715g00028 1 252 Alfin-like Transcription Factor Family AT3G42790 76.285 3.22e-129 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Pral4715g00028 Alfin 2e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4715g00028 K26274 - mof:131164480 468.388