Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4715g00008 ATGAATGAATTGCTTTCTACTGATGGACAAGAATTTTTTACGACCTATGATGAGGTTTATGATACTTTTGATGCAATGGGATTACAAGAAAATCTTTTGAGAGGCATCTATGCTTATGGTTTTGAGAGGCCTTCTGCAATCCAACAGAGGGGAATTGTTCCTTTTTGCAAGGGTCTTGATGTCATTCAACAGGCACAGTCTGGTACTGGCAAGACAGCAACATTCTGCTCGGGAATTTTGCAGCAACTTGATTATGGTTTAGTTCAGTGCCAAGCTTTGGTCTTGGCACCAACAAGGGAGCTAGCGCAGCAGATTGAGAAGGTTATGCGAGCTCTTGGTGATTACCTTGGTGTTAAAGTTCATGCTTGTGTAGGTGGCACAAGTGTTCGTGACGATCAGCGCATTCTCCAAGCTGGTGTTCATGTTGTTGTTGGAACTCCTGGCCGTGTGTTTGACATGCTGCGGAGGCAGTCTCTTCGTCCAGATTACATAAAGATGTTTGTTTTGGATGAGGCTGATGAAATGCTTTCTCGGGGTTTCAAAGACCAGATCTATGACATCTTCCAGCTGCTGCCAGGTAAAATTCAGGTTGGAGTCTTCTCCGCTACAATGCCTCCAGAGGCTCTTGATATTACCAGGAAGTTCATGAATAAGCCTGTGAGAATCTTGGTAAAGCGTGATGAGCTGACCCTTGAAGGTATTAAGCAATTTTATGTCAATGTTGATAAGGAGGAGTGGAAGCTAGAGACACTATGTGATCTTTATGAAACACTGGCCATCACCCAGAGCGTCATTTTTGTCAACACAAGGCGCAAGGTGGACTGGCTAACTGATAAGATGCGAAGCAACGACCATACAGTATCGGCAACCCATGGTGACATGGACCAAAACACCCGAGATATAATTATGCGTGAATTTCGATCTGGTTCTTCTAGAGTTCTGATCACTACTGATCTATTGGCTCGTGGTATTGATGTGCAGCAAGTCTCTCTTGTCATCAACTATGATCTGCCAACCCAGCCTGAAAATTATCTTCATCGAATTGGTCGAAGTGGACGATTTGGAAGGAAAGGTGTGGCTATAAATTTTGTGACAATGGATGATGCAAGAATGCTGTCTGACATTCAGAAGTTCTATAACGTAACCATAGAGGAGTTGCCATCAAATGTTGCGGATCTGCTTTGA 1185 0.4363 MNELLSTDGQEFFTTYDEVYDTFDAMGLQENLLRGIYAYGFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRDDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVGVFSATMPPEALDITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTMDDARMLSDIQKFYNVTIEELPSNVADLL 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4715g00008 394 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 21 377 - -
Pral4715g00008 394 FunFam Eukaryotic initiation factor 4A-III 229 394 - -
Pral4715g00008 394 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 21 49 IPR014014 GO:0003724
Pral4715g00008 394 SMART ultradead3 40 237 IPR014001 -
Pral4715g00008 394 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 375 IPR027417 -
Pral4715g00008 394 Gene3D - 229 394 IPR027417 -
Pral4715g00008 394 Gene3D - 11 228 IPR027417 -
Pral4715g00008 394 SMART helicmild6 274 355 IPR001650 -
Pral4715g00008 394 Pfam DEAD/DEAH box helicase 46 207 IPR011545 GO:0003676|GO:0005524
Pral4715g00008 394 CDD SF2_C_DEAD 234 364 - -
Pral4715g00008 394 Pfam Helicase conserved C-terminal domain 247 355 IPR001650 -
Pral4715g00008 394 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 168 176 IPR000629 -
Pral4715g00008 394 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 233 394 IPR001650 -
Pral4715g00008 394 FunFam Eukaryotic initiation factor 4A-II 9 228 - -
Pral4715g00008 394 CDD DEADc_EIF4A 25 223 - -
Pral4715g00008 394 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 52 222 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4715g00008 Pral-Chr4715 50470 53740 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4715g00008 1 394 Eukaryotic Initiation Factors Gene Family AT1G72730 89.620 0.0 738
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4715g00008 K03257 - gmx:100809395 766.918