Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4712g00001 ATGGCTTCATCTTCTTCCTTTGCTTCGTCTTTTCAATCTCCAAAGAAATATGATGTTTTTATTAGCTTCAGAGGCGAGGACACCCGCTTCAACTTCACAAGCCACCTTCATGAAGCTCTTCGCACAAACCAAATAAATACATACATCGACTACAGACTTGAGAAAGGAGATGAGGTATGGCCGTCTCTTGAGAAAGGCATTGAAAATTCAACTCTGTTCCTTGTGGTCTTCTCAGAAAACTATGCATCTTCCACTTGGTGTCTGAAGGAGCTTGCAAAAATATTAGAGTGCTCCAAAAATCAAGATTGCTCTGTTATGCCGGTGTTCTATAGAGTGGATCCTTCACATGTAAGGAAGCAGTCTGGGAGCTACCAGAAAGCATTTGAAGAACATGAGCGCAAAAGAAACATCAACAATCAACAACTGCAAAAGTGGAGGGACGCTCTTACTCAAGCTGCCGATTTGTCTGGTTGGCCTTGTAGCGTCAATAGGGATGAAGCGGAGCTAATTAAAGAAATAGTGAATTGTGTCATACAAAAGTTGGGCCCTAGGTATCAAAGTGAAGATTATCTAAAAGGCTTGATTGGAATTCACGAAAGAATGGCAGATGTAGAATCCTTGTTGGACAAAGGTTCAAAAATTGGTGGTTGCCAATTCATTGGAATTTGGGGGATGGGCGGTTTGGGCAAAACAACTCTTGCAAAAGCATTGTTTAACAAATTGCGTTTTACATATGAAGGGTCTTGCCTTTTGACTAATGTAAGGGAAGAATCAAAGAGACACGGAATGGATGCTTTGAGGGAAAAAGTTGTTCGGGGGTTATTAGGGGATAAAGAATCTCACATTGGCAATGCAATATGTCCTTATACCGTCAGTACGCTTGGTCGGAAAAAGGTTTTCATTGTGCTTGATGACGTCGATGATCTTACACATTTAGAAAAGTTAGTTGGAAGACATGAATTTGGATCAGGTAGTAAAATCTTGATAACAACCAGAGATAAGCAAACACTTGGTAATGAAGTGGATGATATATATGTGCTTCGTGGTTTGAATCCTGATGAAGCTTTTGATCTATTCTCCATCAATGCCTTTAGAAATGGCTATGTTGACCCAAAGATAAGAGAGCTAGCAGAAGAAGTGACTAAATATGCAGGTGGAAATCCATTGGCTCTAAAGGTTCTGGGCTCCATCTTGCGTGGCAAAAATCAAGAAGCATGGAAAAGCCAATTGGCAAAGCTTCAAAAATTGTTTTGTCCACAAATGCATGCGGTTATTCAACCGAGATTGGATTGGCGAGACTTGAGGAAAAAGCCCTTTTAG 1320 0.4061 MASSSSFASSFQSPKKYDVFISFRGEDTRFNFTSHLHEALRTNQINTYIDYRLEKGDEVWPSLEKGIENSTLFLVVFSENYASSTWCLKELAKILECSKNQDCSVMPVFYRVDPSHVRKQSGSYQKAFEEHERKRNINNQQLQKWRDALTQAADLSGWPCSVNRDEAELIKEIVNCVIQKLGPRYQSEDYLKGLIGIHERMADVESLLDKGSKIGGCQFIGIWGMGGLGKTTLAKALFNKLRFTYEGSCLLTNVREESKRHGMDALREKVVRGLLGDKESHIGNAICPYTVSTLGRKKVFIVLDDVDDLTHLEKLVGRHEFGSGSKILITTRDKQTLGNEVDDIYVLRGLNPDEAFDLFSINAFRNGYVDPKIRELAEEVTKYAGGNPLALKVLGSILRGKNQEAWKSQLAKLQKLFCPQMHAVIQPRLDWRDLRKKPF 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4712g00001 439 Gene3D - 349 430 IPR042197 -
Pral4712g00001 439 PRINTS Disease resistance protein signature 293 307 - -
Pral4712g00001 439 PRINTS Disease resistance protein signature 384 398 - -
Pral4712g00001 439 PRINTS Disease resistance protein signature 219 234 - -
Pral4712g00001 439 Pfam TIR domain 16 195 IPR000157 GO:0007165
Pral4712g00001 439 Gene3D - 187 343 IPR027417 -
Pral4712g00001 439 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 182 - -
Pral4712g00001 439 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 424 IPR027417 -
Pral4712g00001 439 ProSiteProfiles TIR domain profile. 15 181 IPR000157 GO:0007165
Pral4712g00001 439 Gene3D - 14 186 IPR035897 -
Pral4712g00001 439 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 415 IPR044974 GO:0006952
Pral4712g00001 439 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 158 IPR035897 -
Pral4712g00001 439 SMART till_3 16 155 IPR000157 GO:0007165
Pral4712g00001 439 Pfam NB-ARC domain 203 415 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4712g00001 Pral-Chr4712 8253 10115 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4712g00001 11 403 WRKY Transcription Factor Family AT4G12020 29.323 1.29e-37 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4712g00001 - - pcin:129290880 547.354