LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4707g00006	ATGGCTACAAAAAGGCCAAAGTTCAAATATACCTATGATGTATTCTTAAGTTTTAGAGGTGAAGATACGCGTAAATCATTTACTACTCATCTTTATAATGCTCTAAAGCAAGTAGGAATTGAGGTCTTCATGGATGATGAAAGGATTGCAAAGGGAGAACATATTCCAAGTTCATTACTACAAGCAATTGAACATTCTAGAATTTCAATCATTATATTCTCACAAAATTATGCTGGCTCTAGTTGGTGCTTGCAAGAATTAGAGAAAATCATGGAGTGCTACAAAACAACTCAACAAGAGGTTTTTCCTCTATTCTATGATGTGCAACCATCTGAAGTTCGTAAACAGCAGAATGCCTTTGGAAAAGCATGGGAAAGGCTTATAACGACATTCCCGATCAGAAAAGGTAGGAAATTGGCAATCAATTTGAAGAGAGTCCTTAATGAGGCTGCTAACTTATCAGGGTGGGATATGCAAAAATACAGAACTGAGGCTGAGTTACTTGATGATATTGTTAAAACTGTCACAATGAGGCTAGACAACAGCAAATACATGTTTGTTGCTCACCATCCAGTGGGTTTGGATTCTCGAGTGCAAGATATCATCCAATTGCTAAGTTGTGAATCAAATGAGATTATCATAATTGGAATTTGGGGGATGGGTGGGGTGGGTAAGACGACGATGGCTAAAGCTATTTACAATGAAATGGGCCAAAGTTTTGTGGGAAAGAGTTTCCTTGCAAATATTAGGGAAGTATGGAAGCATGATAATGGTCAAGTCTATTTGCAAGAGCAACTTCTTTCTAGCATCTTGAAAACAAGAAGAATCAATATACCAAATGTAGGATTGGGAAAATCTCTAATCAAGGAAATTCTTTGTCAAAAAAGAGTATTCATTGTATTAGATGATGTGGATCATGAAGACCAGCTCAAAGTTTTATGTGAGAGACGTGAATGGTTTGGACAAGGCAGTAGAATAATTGTCACTACTAGAGATGAACGTCTGCTTCAAATCCTTCAAGTGAATAAAGTATTCAATGTGAGGGGAATGGATGATAATGAATCTATTGAACTTTTCAGTTGGCATGCTTTTAAGCAAGCGCTTCCTGAAAGAAATTTTAATGAACTTTCAAGAAGGGTAGTATCATACTCAGGAGGCCTACCACTAGCTCTCGAGATCCTTGGCTCATATTTGTTTGATAGGGAAATACCTTATTGGGAAAGCGCTTTGAATAAATTGGAACAAATTCCAAATGGTAAAATACATGAAATTCTAAAAATAAGTTATGATGGTTTGAGTGACCAAATAGAGCAAGAGCTATTCTTGGACATATGTTGTTTCTTCATTGGGAAGGATAGAAGCTATGCTACTCAAGTATTAGATGGTTGTGGACTTCATGCAGAAGTTGGAATTACCCACCTAATCGAGCGAAGCCTTGTAAAAGTTGTAAAGTTTGGAAATAAAAATATATTTGATATGCATGACTTAATACGTGATATGGGAAGAGAAATAGTTCGTGAGCAATCGCCAACGAAGCTAGAGAAGCGTACAAGATTGTGGTCTAAGGATGATGTGTTGAATGTGTTAGAAAATAACATTGGAACAATGACTATTAAGGGGTTGTCTTTAAACATGCCAAGAAATAATTTAGTATCCTTGAGTACCAAGGCATTTGAGAATATGAAGAGGATTCTTCTACTCAACTTTGATCATGTACAGCTTAACGGAGACTATGGTTGTCTATCAAAAGAATTGAGATGGCTTTGTTGGCATAACTCTCTCTTAGAAAACTTGCCAACGGACTTCAATCTAGAAAAGACAGTTGCCATTGACTTAAAGTGGAGTAATCTCACAAAAGTATGGCTGAAAAACCAGGTGATGGAATGGTTGAAAGTTCTCAATTTGGGTCATTCTCATTGCCTAACAGAAACACCTAACTTCTCAAAACTACCGTATCTTGAGAAGCTGATACTTAAAGATTGTCCACGTTTGTGTATGATTCACCCTTCCATTGGGAATCTTAGATATCTTATTATGTTAAATTTGAAAAATTGCATTGGCTTGGAGCAGCTCCCAAAAGGTATATATGACTTGAAGTCATTGAGAACTCTCAATCTTTTTGGTTGCTCCAAGATTGAAAGGTTGGATGAAGACATTGAGAAAATGGAATCCTTAATGATTTTGGGAGCCAGTCACACTGCTATAACACAAGTACCTATCTCAATAATGAGACTGAAGAACATTAAATATGTTTCTTTATGTGGTTATGAAGGATTGCCCCGTGATGTATTTCCATCTCTTTTTTGTCGTGGATGCCCCCAACAAATCATTCAAAGTCCTTTTGTCAAGCCTTTGGGATCACGCCATCGTTAA	2373	0.3683	MATKRPKFKYTYDVFLSFRGEDTRKSFTTHLYNALKQVGIEVFMDDERIAKGEHIPSSLLQAIEHSRISIIIFSQNYAGSSWCLQELEKIMECYKTTQQEVFPLFYDVQPSEVRKQQNAFGKAWERLITTFPIRKGRKLAINLKRVLNEAANLSGWDMQKYRTEAELLDDIVKTVTMRLDNSKYMFVAHHPVGLDSRVQDIIQLLSCESNEIIIIGIWGMGGVGKTTMAKAIYNEMGQSFVGKSFLANIREVWKHDNGQVYLQEQLLSSILKTRRINIPNVGLGKSLIKEILCQKRVFIVLDDVDHEDQLKVLCERREWFGQGSRIIVTTRDERLLQILQVNKVFNVRGMDDNESIELFSWHAFKQALPERNFNELSRRVVSYSGGLPLALEILGSYLFDREIPYWESALNKLEQIPNGKIHEILKISYDGLSDQIEQELFLDICCFFIGKDRSYATQVLDGCGLHAEVGITHLIERSLVKVVKFGNKNIFDMHDLIRDMGREIVREQSPTKLEKRTRLWSKDDVLNVLENNIGTMTIKGLSLNMPRNNLVSLSTKAFENMKRILLLNFDHVQLNGDYGCLSKELRWLCWHNSLLENLPTDFNLEKTVAIDLKWSNLTKVWLKNQVMEWLKVLNLGHSHCLTETPNFSKLPYLEKLILKDCPRLCMIHPSIGNLRYLIMLNLKNCIGLEQLPKGIYDLKSLRTLNLFGCSKIERLDEDIEKMESLMILGASHTAITQVPISIMRLKNIKYVSLCGYEGLPRDVFPSLFCRGCPQQIIQSPFVKPLGSRHR	790

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4707g00006	790	SUPERFAMILY	Toll/Interleukin receptor TIR domain	7	156	IPR035897	-
	Pral4707g00006	790	PRINTS	Disease resistance protein signature	384	398	-	-
	Pral4707g00006	790	PRINTS	Disease resistance protein signature	696	712	-	-
	Pral4707g00006	790	PRINTS	Disease resistance protein signature	214	229	-	-
	Pral4707g00006	790	PRINTS	Disease resistance protein signature	291	305	-	-
	Pral4707g00006	790	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	184	444	IPR027417	-
	Pral4707g00006	790	Pfam	TIR domain	12	175	IPR000157	GO:0007165
	Pral4707g00006	790	Gene3D	Ribonuclease Inhibitor	508	776	IPR032675	-
	Pral4707g00006	790	Gene3D	-	350	433	IPR042197	-
	Pral4707g00006	790	SUPERFAMILY	"Winged helix" DNA-binding domain	420	530	IPR036390	-
	Pral4707g00006	790	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	12	726	IPR044974	GO:0006952
	Pral4707g00006	790	FunFam	Disease resistance protein (TIR-NBS-LRR class)	9	181	-	-
	Pral4707g00006	790	ProSiteProfiles	TIR domain profile.	10	179	IPR000157	GO:0007165
	Pral4707g00006	790	SUPERFAMILY	L domain-like	543	766	-	-
	Pral4707g00006	790	FunFam	Disease resistance protein (TIR-NBS-LRR class)	351	433	-	-
	Pral4707g00006	790	Pfam	NB-ARC domain	197	430	IPR002182	GO:0043531
	Pral4707g00006	790	Gene3D	-	6	177	IPR035897	-
	Pral4707g00006	790	SMART	till_3	11	153	IPR000157	GO:0007165
	Pral4707g00006	790	Gene3D	-	178	344	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4707g00006	Pral-Chr4707	78765	137811	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4707g00006	6	745	WRKY Transcription Factor Family	AT4G12020	30.184	5.58e-80	279

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4707g00006	-		-	pcin:129288830	1114.75