Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4705g00006 ATGATGATGATGATGCCTTTTGTGACTACTTGTCATAATGTTTCCCATCAAATTCCCTTCAGTCCTAATCCTATGAATAATGCTCTCACGCACAGTACTCCTTTCCTTCCTCTGCCTTCTTCTTGCACTAATACTTCTAATCATCAACCCCAAAACCACAACAGTTCTGGGTTAGTCTCCTTTTTCATGGACAACAACAACAACAACAACGCTAGCTCTTCTTCTTGTTCTGCTGCTAAAGCAAAGATCATGGCTCATCCTCACTATCATCGTCTTTTGTCTGCCTACGTTAATTGCCAAAAGGTTGGAGCGCCGCCGGAAGCGGTGGCGAGGTTGGAGGAAGCATGTGCTTCTGCGTTGACAATGGCAGCCGGCGGCGGTTCGGGGTGTATCGGAGAAGATCCGGCACTGGATCAGTTTATGGAGGCATATTGTGAGATGCTTACCAAGTATGAGCAAGAACTCTCCAAACCCTTCAGGGAAGCTATGCACTTCCTTCACACCATCGAGTCTCAGTTCAAAGCTCTCACTATTTCTTCTTCTTCAGACTTCGCTTGTGGTGAGGCTAGTGATCGGAATGGATCATCAGAAGAAGACATGGATGTGCCAAAGAATCTGATTGATCCGCTGGCAGATGATCAAGAATTGAAAGGCCAACTTCTTCGCAAATACAGCGGATACCTGGGCAGTCTGAAGCAGGAATTCATGAAGAAGAGGAAGAAAGGGAAGCTTCCTAAAGAAGCAAGGCAACAACTTCTGGACTGGTGGAGCAGACACTATAAATGGCCTTACCCATCTGAGTCGCAGAAGCTGGCGCTGGCAGAATCAACAGGACTGGATCAGAAGCAAATAAACAATTGGTTCATTAATCAAAGGAAGCGTCATTGGAAACCATCGGAGGATATGCAATTCATGGTGGTGGATCCTTCTCATCCTCATCACCATTATTACATGGACACTGTTCTTGGCAATCCCTATCCAATGATCTAA 990 0.4576 MMMMMPFVTTCHNVSHQIPFSPNPMNNALTHSTPFLPLPSSCTNTSNHQPQNHNSSGLVSFFMDNNNNNNASSSSCSAAKAKIMAHPHYHRLLSAYVNCQKVGAPPEAVARLEEACASALTMAAGGGSGCIGEDPALDQFMEAYCEMLTKYEQELSKPFREAMHFLHTIESQFKALTISSSSDFACGEASDRNGSSEEDMDVPKNLIDPLADDQELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVVDPSHPHHHYYMDTVLGNPYPMI 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4705g00006 329 FunFam Homeobox protein knotted-1-like 2 240 302 - -
Pral4705g00006 329 Gene3D - 240 302 - -
Pral4705g00006 329 CDD homeodomain 247 299 IPR001356 GO:0003677
Pral4705g00006 329 Pfam KNOX2 domain 130 177 IPR005541 GO:0003677|GO:0005634
Pral4705g00006 329 ProSitePatterns 'Homeobox' domain signature. 273 296 IPR017970 GO:0000981|GO:0006355
Pral4705g00006 329 SMART KNOX2_2 127 178 IPR005541 GO:0003677|GO:0005634
Pral4705g00006 329 Pfam KNOX1 domain 80 117 IPR005540 GO:0003677|GO:0005634
Pral4705g00006 329 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 49 304 - -
Pral4705g00006 329 Pfam ELK domain 215 236 IPR005539 GO:0003677
Pral4705g00006 329 SUPERFAMILY Homeodomain-like 237 314 IPR009057 -
Pral4705g00006 329 SMART ELK_2 215 236 IPR005539 GO:0003677
Pral4705g00006 329 SMART HOX_1 237 302 IPR001356 GO:0003677
Pral4705g00006 329 Pfam Homeobox KN domain 255 294 IPR008422 GO:0003677|GO:0006355
Pral4705g00006 329 ProSiteProfiles 'Homeobox' domain profile. 235 298 IPR001356 GO:0003677
Pral4705g00006 329 SMART KNOX1_2 77 121 IPR005540 GO:0003677|GO:0005634
Pral4705g00006 329 ProSiteProfiles ELK domain profile. 215 235 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4705g00006 Pral-Chr4705 34843 39898 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4705g00006 79 328 Homeobox Transcription Factor Family AT1G62360 79.608 8.95e-128 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pral4705g00006 KNOX2 3.5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4705g00006 - - qsa:O6P43_031286 481.485