LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4694g00001	ATGGGCCAAACGCAATCGAAGGACGAGCTTCTTTACCAGCAAATCAGTTATGGGAACATCGAAGGAATCAAAGCCCTTCATAGGGAGGGAGCAGGATTAGAGTGGGTGGACAGAGAGGGAAAGACGCCTTTGATCGTTGCTTGTATGAACCCTGAGCTGTATGATGTCGCCAAAATATTGATTGAACTTGGTGCCAATGTCAATGCATACCGTCCGGGACGGCATGCTGGCACTCCATTGCATCATGCAGCTAAAAGAGGCCTTGAGAGTATTGTGAAGTTGCTCCTTTTGCATGGAGCTAATGCATTGTTCATGAATGATGATTGCCAAACTGCTCTTGATGTTGCCAGGGCCAAGGGCCACGGCAATGTTGTTCATGCTATTGAGAGTCATCTCTGCTTGTTCTCTGGTTGGCTGCGGGAGTTCCATGGACCTGGATTCCTAGAAGTAGTAGCTCCACAGCTAGTATCTAAGAAAGTTTGGGTGGTTGTTTTACCAGTTGGCTCTCGGAATCTTACCAGACCCTACAAGCTGGAGCTTGCCATATATTCTAGTATGCAGGATGCACAACCACGGACAGTTATTGCTCTTTGGAAGGCCAACTTAGATGAACCAAAGCTACACCAGTCAGATCCTTCAGTGACTATCGCTGATCTCACTACAAAAACACGTATTAAACTTGCACCTGCAAGTGAGAGTGACAAGCAACAACTTAAGTGGTTTTCTGATGCATGCAAAGGAATTCCACAGGAAAGTCCGGCATTTTTGCAGGGTAACATTAGAACAGCTCCTCCCTCAGCGCCACCAGCTGCAGAAGATCTAGAGATGGCTGCTGCTATCAGAGCATCTATGCAGTCTGCCGTGCACGAGAGGCCATCCCTTGCAAATACCCTGCCAAACTTTGGAGCAAGCTCGTCAAGTGGAGAAACTACAAACATGCATGGTTCAATCAGCACGTCAAATCCGAAGACAAGTGGTAGTTTGCCTGCAAATGAAGTTGCACTGGGTAGCAATTCAAGTGAGCCCATCGATGATGATGAGCCTGTTTCTCAAAGCTCTGGTGGTTTAGATTTGATTCCATCAGCTCCTCCAATTGCGGATGAGTATCCAGTTAATGGCCCCATTCATTACCCCTCAATTGATGTAAGCCCTGTTGAAATATCATCTTCAGCCGCAGAGAAGCCACCTGAAGATGAAAAGATTGCCGCGGGGAGTGGTTCTTCTTGTGTGATCTGTTTAGATGCTCCGGCCGAGGGTGTATGCATACCCTGTGGCCATGTTGCCGGATGCATGTCTTGCTTGAATGAGGTCAAAGCAAAGAAATGGGGTTGCCCGGTTTGTCGAGCAAAGATCGATCAGGTGATAAAGATATATCACGTTTAA	1383	0.4722	MGQTQSKDELLYQQISYGNIEGIKALHREGAGLEWVDREGKTPLIVACMNPELYDVAKILIELGANVNAYRPGRHAGTPLHHAAKRGLESIVKLLLLHGANALFMNDDCQTALDVARAKGHGNVVHAIESHLCLFSGWLREFHGPGFLEVVAPQLVSKKVWVVVLPVGSRNLTRPYKLELAIYSSMQDAQPRTVIALWKANLDEPKLHQSDPSVTIADLTTKTRIKLAPASESDKQQLKWFSDACKGIPQESPAFLQGNIRTAPPSAPPAAEDLEMAAAIRASMQSAVHERPSLANTLPNFGASSSSGETTNMHGSISTSNPKTSGSLPANEVALGSNSSEPIDDDEPVSQSSGGLDLIPSAPPIADEYPVNGPIHYPSIDVSPVEISSSAAEKPPEDEKIAAGSGSSCVICLDAPAEGVCIPCGHVAGCMSCLNEVKAKKWGCPVCRAKIDQVIKIYHV	460

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4694g00001	460	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	386	459	IPR013083	-
	Pral4694g00001	460	SUPERFAMILY	Ankyrin repeat	8	133	IPR036770	-
	Pral4694g00001	460	ProSiteProfiles	Ankyrin repeat profile.	39	72	IPR002110	GO:0005515
	Pral4694g00001	460	PANTHER	ROLLING PEBBLES, ISOFORM B	400	457	-	-
	Pral4694g00001	460	Pfam	Ankyrin repeat	40	69	IPR002110	GO:0005515
	Pral4694g00001	460	Pfam	Ankyrin repeat	78	101	IPR002110	GO:0005515
	Pral4694g00001	460	CDD	RING-HC_XBAT35-like	405	458	-	-
	Pral4694g00001	460	Gene3D	-	2	134	IPR036770	-
	Pral4694g00001	460	ProSiteProfiles	Ankyrin repeat profile.	75	107	IPR002110	GO:0005515
	Pral4694g00001	460	MobiDBLite	consensus disorder prediction	295	347	-	-
	Pral4694g00001	460	ProSiteProfiles	Zinc finger RING-type profile.	409	448	IPR001841	-
	Pral4694g00001	460	ProSiteProfiles	Ankyrin repeat region circular profile.	75	101	-	-
	Pral4694g00001	460	ProSiteProfiles	Ankyrin repeat region circular profile.	39	69	-	-
	Pral4694g00001	460	SMART	ring_2	409	447	IPR001841	-
	Pral4694g00001	460	Pfam	Zinc finger, C3HC4 type (RING finger)	407	454	-	-
	Pral4694g00001	460	SMART	ANK_2a	75	104	IPR002110	GO:0005515
	Pral4694g00001	460	SMART	ANK_2a	39	69	IPR002110	GO:0005515
	Pral4694g00001	460	MobiDBLite	consensus disorder prediction	295	363	-	-
	Pral4694g00001	460	SUPERFAMILY	RING/U-box	408	454	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4694g00001	Pral-Chr4694	2030	10016	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4694g00001	403	457	C3H Transcription Factor Family	AT3G06140	34.545	2.13e-08	53.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4694g00001	-		-	lang:109354249	681.404