LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4691g00051	ATGCCCTTGCTTACGATCCTAGACTTATCTTACACTAGTGTGCGTGAACTACCAGACTCTCTTTTTGAGTTGGAGCAGCTCAGAGAAATGTATTTGAAAGGTTGTGAATGTTTCATGAAATTGTCACCAAAAATTGGAAAATTGAAGAAACTTGAGAAGCTCGATCTTGACGGAACTGAGATCATACATCTGCCAGAAGAGATTCAAGAGTTAACCAAGCTCCAAAGCTTGTTCCTTTGCTTCTGTGAATATCGTGGCAAAAAAGGCAAGCAATATTCGTGCCCAACAATTATTCCATCTGAGGTAATCTCAAAACTCAAGGGGTTAAAACATTTAGGTATTGATGTGAACCCTGATGATGAGCGGTGGTATGAGAATGTACTGGACATTCTTCCAGAAATCTTGGGATTAGAGCATTTGCTGACTCTTAACTTATATATCCCGCATCTGGAACTTTTAAAGTTCATACCAGACCGTATATTATTGCGGGGTGATTTTAGATTTATTGTTGGTAGGCATATGCAAAGGATCATATCAAGTACCCCATCCACATGTGAGGCAAAATTTAAACAAAGTGGCTGTAGCTTGAAGTTTGTAAATGGTGATGATGTCCCTAATGAAATTGAAAGGCTTGTTAGACACAGTAAGGCTTTATTTCTGGAGAGACATAAGACAATCAATAGCCTATCAGGATTTAACGTGATGAATTTAGAGCAGCTGCGCGTATGTATGTTGGCAGAATGCAGAGAAATGCAAACAGTTGTTGATGGAAGAAAAACAATTAGGGGTAATGACATTTTCTCACATTTGCTATACTTGTGCATATCACACATGAAGAGTTTGAGAAGCATATGGGAAGGGCTACTTCCACCTCGCTGCTTTTTTGGTATGCTGAAGTGTTTAGTACTGCAAAATTGCCCGGAGTTAACAACTATCTTTACCTTGGATTTTTTGGGCAATCTTTCACTATTAAAGGAGATTATAGTTAAGGATTGTCCCAAAGTAACCACGTTGATAAGTGATGGATCATTCAAACATAAAGGAGAGGTCTTCCTGCCTAACTTGAGAAGGATATTACTTCTCCATCTTCCTGAGTTGATCACTATTTCCAATGGATGTTACATAGCTCCAAGCTTGAATACTATGGGAATTTATGATTGCCCAAAGCTCCAAAGCCTTTCTAAGTCGGAACTGTCAAGCCAAACTCTGAACATCAAGGGAGAAATCAAATGGTGGGATCAACTGCAATGGAGCAGAGAAGAGTGTGGAATACCGCAACGACCGTCTAAGTTTGATGGCATTTTTTCCTCAATTGATAATCAGGTTGATATAATGACTCAAATGGGAAATGATGGTGATGATATTGATGATAATGCAGATATGATGTCGCTACAGACTTTATTTGAGCACCCAGAGCAAAATGCCGAAACATTTAGCAGAATCAGTGATGATATTGACGATGATGCAGATATGATGTCGCTACAGACTTTATTTGAGCACCCAGAGCAAGATGCCGAAACATTTAGCAGAATGCGTGATGATATTGACGATGATGCAGATATGATGTCGCTACAGACTTTATTTGAGCACCCAGAGCAAAATGCCGAAACATCTAGCAGAGTGAGTGGTGATATTGACGATGATGCAGATATGATGTCGCTACAGACTTTATTTGAGCACCCAAAGCAAGATGCCGGAAGATTTAGCAGAATGACTTTTTCAGTCTCAAGAAAAATACCTGAACCTGAAGATCATACTCCAGATGATGGGTACAGTTGGAGGAAGTATGGCCAGAAAATAGTGGCTGGATCCAAAATTCCAAGTTCCTATTACAAATGTACTCATGTAGGTTGCCCAGTTAAAAAGAAATTAACGCGACGATCTGAGGAAGACCTAACAATAGTTGAAATCGTTTACAAGGGAACACATACGCACCCCAGTCGCCAGCGTGACAGATCCCTCCACGAACTAAAGTCCAATGTCTTCGATGATGACTATAGATGGAAGAAATATGGTGAGGAAATCATTAGCGGATCACCCAATCCAAGAAGTTATTATGGATGTGTTTCCACAGATTGCTCTGCTAAAAAACACGTGCAAGTATCAGATGAAGATCCAACCATGGTCGAAATCACTTCCACTGGAGTTCACACTTGTTCCACCCCATTTTGTGAAGACGCTGCCGTGAACGAACCATGTGACTCAGTACTGACTCAGACTTGA	2223	0.4026	MPLLTILDLSYTSVRELPDSLFELEQLREMYLKGCECFMKLSPKIGKLKKLEKLDLDGTEIIHLPEEIQELTKLQSLFLCFCEYRGKKGKQYSCPTIIPSEVISKLKGLKHLGIDVNPDDERWYENVLDILPEILGLEHLLTLNLYIPHLELLKFIPDRILLRGDFRFIVGRHMQRIISSTPSTCEAKFKQSGCSLKFVNGDDVPNEIERLVRHSKALFLERHKTINSLSGFNVMNLEQLRVCMLAECREMQTVVDGRKTIRGNDIFSHLLYLCISHMKSLRSIWEGLLPPRCFFGMLKCLVLQNCPELTTIFTLDFLGNLSLLKEIIVKDCPKVTTLISDGSFKHKGEVFLPNLRRILLLHLPELITISNGCYIAPSLNTMGIYDCPKLQSLSKSELSSQTLNIKGEIKWWDQLQWSREECGIPQRPSKFDGIFSSIDNQVDIMTQMGNDGDDIDDNADMMSLQTLFEHPEQNAETFSRISDDIDDDADMMSLQTLFEHPEQDAETFSRMRDDIDDDADMMSLQTLFEHPEQNAETSSRVSGDIDDDADMMSLQTLFEHPKQDAGRFSRMTFSVSRKIPEPEDHTPDDGYSWRKYGQKIVAGSKIPSSYYKCTHVGCPVKKKLTRRSEEDLTIVEIVYKGTHTHPSRQRDRSLHELKSNVFDDDYRWKKYGEEIISGSPNPRSYYGCVSTDCSAKKHVQVSDEDPTMVEITSTGVHTCSTPFCEDAAVNEPCDSVLTQT	740

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4691g00051	740	SMART	WRKY_cls	587	647	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pral4691g00051	740	SMART	WRKY_cls	662	721	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pral4691g00051	740	SMART	LRR_typ_2	1	24	IPR003591	-
	Pral4691g00051	740	SMART	LRR_typ_2	48	71	IPR003591	-
	Pral4691g00051	740	Gene3D	Ribonuclease Inhibitor	187	409	IPR032675	-
	Pral4691g00051	740	SUPERFAMILY	WRKY DNA-binding domain	585	647	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pral4691g00051	740	ProSiteProfiles	WRKY domain profile.	657	722	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pral4691g00051	740	Gene3D	Ribonuclease Inhibitor	1	163	IPR032675	-
	Pral4691g00051	740	SUPERFAMILY	WRKY DNA-binding domain	658	722	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pral4691g00051	740	ProSiteProfiles	WRKY domain profile.	582	648	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pral4691g00051	740	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	660	723	IPR044810	GO:0003700
	Pral4691g00051	740	Gene3D	WRKY domain	576	647	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pral4691g00051	740	Gene3D	WRKY domain	652	723	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pral4691g00051	740	Pfam	WRKY DNA -binding domain	663	719	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pral4691g00051	740	Pfam	WRKY DNA -binding domain	588	646	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pral4691g00051	740	SUPERFAMILY	L domain-like	2	407	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4691g00051	Pral-Chr4691	539954	547661	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4691g00051	584	722	WRKY Transcription Factor Family	AT5G07100	37.297	4.12e-32	122

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Pral4691g00051		WRKY	1.7e-23	CL0274