Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4691g00028 ATGGCATTTATGGCTTCAAATCAGACACCTGGTGGAAACCAACCAGCAGGGCCGACAAATGATGACTTGTACAAGGAATTGTGGCATGCTTGTGCTGGTCCCCTTGTCACTCTTCCCCGTGAAGGAGAACGAGTTTATTATTTTCCTCAGGGGCATATGGAACAGCTTGAGGCATCTATGCATCAAGGAGCAGAGCAACAAATGCCTTCCTTCAACCTGCCATCTAAAATTTTATGCAAAGTGGTCAATGTTCTTCTTCGGGCTGAACCTGAGACTGATGAAGTATATGCACAGATAACTTTGCTTCCAGAAACAGATCAAAGTGAGTTGAGTAGTCCGGATGATCCTCTGCCGGAACCTTCAAGATGCACTGTCCATTCCTTTTGTAAAACACTCACTGCATCTGACACCAGTACCCATGGCGGATTTTCTGTGCTTCGGAGGCATGCAGATGAATGTTTGCCACCCTTGGACATGTCTCAGCAGCCACCATGGCAGGAATTGGTTGCAACTGATTTGCATGGGAATGAATGGCATTTTAGGCATATTTTCCGAGGGCAACCTAGGCGCCACTTACTGACTACTGGGTGGAGTGTCTTTGTCAGTTCCAAGAAGTTAGTTGCTGGTGACGCATTTATATTCCTGAGAGGTGAAAATGGGGAGCTGCGTGTTGGAGTTAGGAGGCTGATGAGACAGCAAAATAACATGCCTTCATCTGTTATATCAAGTCACAGTATGCATCTGGGTGTTTTGGCCACTGCATCTCATGCAATTGCCACTGGAACTCTGTTTTCTGTATTTTACAAGCCCAGAACAAGCCGATCGGAGTTTATTGTGAGTGTCAACAAGTATCTTGAAGCTAAGAGTCATAAGTTTTCGGTTGGGATGAGATTCAAGATGAGGTTTGAAGGCGATGAAGTTCCTGAAAGAAGGTTTAGCGGTACAATTGTTGGGGTTGGAGATAATATCTCACCTGTCTGGGCTGATTCTGAGTGGCGCTCATTAAAGGTTCAATGGGATGAACCCTCTTCAATCTTGCGACCTGATAGAGTTTCTCCTTGGGAATTGGAGCCACTTGTGAATACCACCACTCCGGCAAATTCCCAACCAACCCAAAGAAACAAGAGGGCACGTCCTCCCCTCCTACCATCAGCAGTGCCTGATTCTTTGCAAGGTGTCTGGAAATCAGTTAATAAATCTCAGCCATTCTCTTATGGTGATCACCAACATGCACGAGACCTCTATTCATCATCCAAGTTCAATCCTACTGCTGCTAACTTTCTAGGTATTGGCGGGAACAGTTCTATGGGTCCTGTTTCTAATAATGCAACTTATTGGTCCAATAGAGCGGAGAACTCTTTGGAGACAATGGCCCCTAAAGAATCCAGTGAAAAGAGACAAGGCACTGGAAATGGCTGTAGGCTCTTTGGGATCCAGTTACTTGAGAATTCTAATGTAGAAGAAAGTGTGTTGCCGATCACATTGTCAGGAAGAGTAGGAGATGATAGGTCTTCTCGATATGCTGTTGCTGAATCTGATCGGCATTCAGAACCATCAAATGTTAATTGTGCTGATGTTCCTTCAGTAAGTTGTGATGCTGAAAAATCATGTTTGCAGTCTCCCCCTGAAGCACTAGGCAGGCAAATAAGAAGCTGCACAAAGGTTCACATGCAAGGGATGGCTGTTGGAAGGGCTGTGGATTTGACTAGGTTTGATGGATATGAAGATCTGCTTAAGAAATTGGAGGAGATGTTTGACATCAAGGGTGAGCTTTGTGGATCCACTAAAACTTGGCAGGTTGTCTACACCGATAACGAAGATGATGTGATGATGGTCGGAGATATTCCATGGAATGAGTTCTGTGGTGCTGTGAGGAAAATTTTCATTTACACCATAGAGGAGGTGAAGAAGCTTTCGCCCAAAGCACTACTTTCATTTGGTGAAGAAGCTAAAACAGGCAAGCCAGACTGTGAAGCAGCAGTTAATGCTGAGGACCAGGATCAGTCGTCTATTGTGGGGCCTGGTTGTTAA 2031 0.4505 MAFMASNQTPGGNQPAGPTNDDLYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMHQGAEQQMPSFNLPSKILCKVVNVLLRAEPETDEVYAQITLLPETDQSELSSPDDPLPEPSRCTVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQNNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEAKSHKFSVGMRFKMRFEGDEVPERRFSGTIVGVGDNISPVWADSEWRSLKVQWDEPSSILRPDRVSPWELEPLVNTTTPANSQPTQRNKRARPPLLPSAVPDSLQGVWKSVNKSQPFSYGDHQHARDLYSSSKFNPTAANFLGIGGNSSMGPVSNNATYWSNRAENSLETMAPKESSEKRQGTGNGCRLFGIQLLENSNVEESVLPITLSGRVGDDRSSRYAVAESDRHSEPSNVNCADVPSVSCDAEKSCLQSPPEALGRQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLKKLEEMFDIKGELCGSTKTWQVVYTDNEDDVMMVGDIPWNEFCGAVRKIFIYTIEEVKKLSPKALLSFGEEAKTGKPDCEAAVNAEDQDQSSIVGPGC 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4691g00028 676 Pfam AUX/IAA family 549 640 IPR033389 -
Pral4691g00028 676 MobiDBLite consensus disorder prediction 360 387 - -
Pral4691g00028 676 MobiDBLite consensus disorder prediction 1 20 - -
Pral4691g00028 676 FunFam Auxin response factor 126 230 - -
Pral4691g00028 676 SUPERFAMILY CAD & PB1 domains 552 627 - -
Pral4691g00028 676 SUPERFAMILY DNA-binding pseudobarrel domain 117 257 IPR015300 -
Pral4691g00028 676 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 22 639 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pral4691g00028 676 Pfam B3 DNA binding domain 128 228 IPR003340 GO:0003677
Pral4691g00028 676 CDD B3_DNA 126 228 IPR003340 GO:0003677
Pral4691g00028 676 ProSiteProfiles PB1 domain profile. 550 643 IPR000270 GO:0005515
Pral4691g00028 676 Gene3D - 291 364 - -
Pral4691g00028 676 Gene3D - 125 230 IPR015300 -
Pral4691g00028 676 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Pral4691g00028 676 Pfam Auxin response factor 254 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pral4691g00028 676 SMART B3_2 128 230 IPR003340 GO:0003677
Pral4691g00028 676 MobiDBLite consensus disorder prediction 1 16 - -
Pral4691g00028 676 FunFam Auxin response factor 546 639 - -
Pral4691g00028 676 Gene3D - 546 639 - -
Pral4691g00028 676 MobiDBLite consensus disorder prediction 360 375 - -
Pral4691g00028 676 FunFam Auxin response factor 291 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4691g00028 Pral-Chr4691 324543 332255 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4691g00028 5 673 B3 DNA Binding Superfamily AT1G59750 69.837 0.0 924
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pral4691g00028 AUX_IAA 3.2e-13 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4691g00028 K14486 - gmx:100793224 1094.34