Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4691g00011 ATGGAAAGCATACCGCACCCAATACCGAGAACAGTGGAGGAGGTTTTCAGCGACTTTAAGGGAAGAAGAGCTGGATTAATTAAGGCCCTCACTACTGATGTTGAAAAGTTCTACCAGCAGTGCGATCCTGAGAAAGAGAACTTGTGTCTATATGGATTACCAAATGAAACATGGGAAGTGAATTTGCCTGTTGAGGAAGTGCCTCCTGAACTTCCTGAGCCAGCATTAGGTATAAACTTTGCGAGGGATGGGATGCAAGAGAAGGATTGGTTGTCACTGGTTGCAGTTCACAGTGACTCATGGCTGCTTGCTGTGTCTTTCTATTTTGGTGCCCGCTTTGGATTTGGTAAGAATGAAAGGAAAAGGCTTTTTCAGATGATAAATGATCTCCCAACCATATTTGAAGTTGTGACGGGAAGCGCCAAGCAATCAAAGGATCAGTCAGCTGCTCACAACAATGGTAGCAAAAGCAAGTCAAGTGGGAAGGCCAAGGGAGTGAAAATGTCTCCTCCTCCCAAAGAAGAGGATGAGAGCGGAGAAGAAGAAGAAGATGATGATGAACAAGGGGCAACATGTGGAGCATGCGGTGATAATTATGGCACTGACGAGTTCTGGATCTGTTGCGATGTGTGTGAGAGATGGTTCCATGGCAAATGTGTGAAAATCACTCCTGCTAAGGCTGAACACATCAAGCAATATAAGTGCCCTAGCTGCAGTAATAAGAGGGCTAGAGTTTAG 738 0.4526 MESIPHPIPRTVEEVFSDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVSFYFGARFGFGKNERKRLFQMINDLPTIFEVVTGSAKQSKDQSAAHNNGSKSKSSGKAKGVKMSPPPKEEDESGEEEEDDDEQGATCGACGDNYGTDEFWICCDVCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4691g00011 245 SUPERFAMILY FYVE/PHD zinc finger 180 242 IPR011011 -
Pral4691g00011 245 CDD PHD_AL_plant 192 241 IPR044104 -
Pral4691g00011 245 FunFam PHD finger alfin-like protein 184 240 - -
Pral4691g00011 245 ProSitePatterns Zinc finger PHD-type signature. 192 238 IPR019786 -
Pral4691g00011 245 MobiDBLite consensus disorder prediction 144 162 - -
Pral4691g00011 245 ProSiteProfiles Zinc finger PHD-type profile. 189 241 IPR019787 -
Pral4691g00011 245 MobiDBLite consensus disorder prediction 144 189 - -
Pral4691g00011 245 PANTHER CPG BINDING PROTEIN 9 244 IPR045104 GO:0006355|GO:0042393
Pral4691g00011 245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 240 IPR013083 -
Pral4691g00011 245 Pfam PHD-finger 192 241 IPR019787 -
Pral4691g00011 245 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Pral4691g00011 245 MobiDBLite consensus disorder prediction 175 189 - -
Pral4691g00011 245 SMART PHD_3 191 239 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4691g00011 Pral-Chr4691 193513 199319 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4691g00011 1 242 Alfin-like Transcription Factor Family AT1G14510 81.124 6.55e-134 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Pral4691g00011 Alfin 1.7e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4691g00011 K26274 - gmx:100807826 441.425