Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4688g00050 ATGACGTCGTCTCAGGAGCATGAGATGGATCAAGACGACGATGGCGGAACTTCCGACCTCAGCACCAGCGCCGGCGATCCTCGGGCCATCAATACCGACAAAAACAATGGACTTTCGAAAGAGCCTGTCTCGGACGATCCCATGGCTTTCCAGGCCTTGCCGTTGAAGGAGGAGCCCGTTGATTCGGACCCGCCGTCAGACCAGGAACAAAAGACGCAGCCTTCCTCGTCGGCTCCGATTGGAGTCGTTCCTGTGGCGATGCAGATGCAAATGCCCCTAACTATGTCCATGCCCATGCCGGTCGCTACCACGAGACGCTCCTCCACCAAGGACCGTCACACGAAGGTGGAAGGCCGCGGGCGTAGGATCCGAATACCCGCCACTTGCGCGGCTCGGATCTTTCAGCTGACTCGGGAGCTAGGTCATAAGTCTGATGGCGAAACCGTGCGGTGGCTCCTCGAACACGCGGAGCAGGCCATCATCGAGGCCACCGGCACAGGCACCGTCCCAGCCATCGCCGTCTCCGTCGGGGGAACTCTGAAGATTCCTACAACGTCTGGCGCAAACAGCAATCCGGACTCCGAACTCAGGAAGAAGCGAAAAAGGCCGTCGAATAGTGAGTTTGTGGACGTGAGTGAAGCCGCCTCACAATCGTCCGGTTTGGCCCCGGTTCAATCGGCTCTTCCGCAAGGCCTTGTGCCTGTGTGGGCAGTGGGCAACACTAATATGATGATCCCGGCGAACGCCTTTTGGATGATCCCTCCGGCGACAACGACGACGCCAGTAGGTGGAAGTCCAGGATCGTCAAACCAACAACCTCAGATATGGACTCTGTCGCCGACGGTGACGCCCGTATTCAACATGGCCGCCAGACCCGCATCGTCTTTGGTGGCAGCAACAAATACCTCGAGCGGCATAGAAGTCTCGCCGGTGGGATGCAACAATTCGTCCAACACAGCGGCGGTGAGCACGAGCACGGTGGGGCCAACGGCGGCGAAGAAATCGACGATGGCACCGAGCAGTTGTAGCGGGGCGACGGGCAGTAGTAGTAGCAGCGGCAGCAAGGCGCATATGTTGAGGGATTTTTCATTGGAGATTTACGATAAGCAAGAGTTGCAGCTGATGGGGCGGTCAGGAGGGAACAAGCAAGCGTGA 1155 0.5844 MTSSQEHEMDQDDDGGTSDLSTSAGDPRAINTDKNNGLSKEPVSDDPMAFQALPLKEEPVDSDPPSDQEQKTQPSSSAPIGVVPVAMQMQMPLTMSMPMPVATTRRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVSVGGTLKIPTTSGAXNSNPDSELRKKRKRPSNSEFVDVSEAASQSSGLAPVQSALPQGLVPVWAVGNTNMMIPANAFWMIPPATTTTPVGGSPGSSNQQPQIWTLSPTVTPVFNMAARPASSLVAATNTSSGIEVSPVGCNNSSNTAAVSTSTVGPTAAKKSTMAPSSCSGATGSSSSSGSKAHMLRDFSLEIYDKQELQLMGRSGGNKQA 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4688g00050 385 ProSiteProfiles TCP domain profile. 109 163 IPR017887 -
Pral4688g00050 385 Pfam TCP family transcription factor 108 187 IPR017887 -
Pral4688g00050 385 MobiDBLite consensus disorder prediction 194 208 - -
Pral4688g00050 385 MobiDBLite consensus disorder prediction 16 38 - -
Pral4688g00050 385 MobiDBLite consensus disorder prediction 1 86 - -
Pral4688g00050 385 MobiDBLite consensus disorder prediction 332 356 - -
Pral4688g00050 385 MobiDBLite consensus disorder prediction 180 213 - -
Pral4688g00050 385 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 66 372 IPR005333 GO:0003700
Pral4688g00050 385 MobiDBLite consensus disorder prediction 257 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4688g00050 Pral-Chr4688 247302 249127 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4688g00050 91 376 TCP Transcription Factor Family AT2G45680 49.196 4.12e-73 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pral4688g00050 TCP 4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4688g00050 - - pcin:129284605 624.78