Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4688g00043 ATGGTGAGGGGAAAGACTCAGATGAAACGCATAGAAAATGATACAAGCAGGCAGGTCACCTTCTCCAAGCGAAGAAACGGGCTGCTTAAGAAGGCTTTCGAGCTGTCTGTGCTATGCGAAGCTGAAGTTGCACTCATTATCTTCTCGCCCAGAGGCAGGCTTTCTGAGTTCGCCAGTTCTAGATACTTCAGTGTGAATAAAACGGTTGAACGCTACCTAAGGAAAGTTAAGGACCGGGGTCTGGGCACCAAAGGAAGCCAGGCAAATACGCAGGAAGGTACTATTAACATGACTAAGAAGATAGAGCATCTTGAAGTTCTTAAAAGGAAGCTTCTGGGAGATGGTTTGGATGCGTGTTCTATTGACGAGTTACGTCAGACAGAGAACCAGCTGGAACAAAGCTTAAGTAAAATTAGGGCAAGAAAGGATCAACTGTTGAAGGAACAGATCCAGGAGCTAAGAGAAGAGGAAAAGCGCTTACTGGACATAAATGAAGAGTTACGGGAGCAGTGTGGCGATGAACTGCGGCGGCGGAATTCGCCTGAAGAGCAGGATGTTGAGCACCGGAATGACGGAACGGATGGCGTGGAGACAGAGTTGGTTATAGGGCCACCAGAGAGACGAATGCCTTGA 633 0.4787 MVRGKTQMKRIENDTSRQVTFSKRRNGLLKKAFELSVLCEAEVALIIFSPRGRLSEFASSRYFSVNKTVERYLRKVKDRGLGTKGSQANTQEGTINMTKKIEHLEVLKRKLLGDGLDACSIDELRQTENQLEQSLSKIRARKDQLLKEQIQELREEEKRLLDINEELREQCGDELRRRNSPEEQDVEHRNDGTDGVETELVIGPPERRMP 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4688g00043 210 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral4688g00043 210 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
Pral4688g00043 210 MobiDBLite consensus disorder prediction 171 195 - -
Pral4688g00043 210 MobiDBLite consensus disorder prediction 171 210 - -
Pral4688g00043 210 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 176 - -
Pral4688g00043 210 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral4688g00043 210 SUPERFAMILY SRF-like 3 76 IPR036879 GO:0003677|GO:0046983
Pral4688g00043 210 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral4688g00043 210 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral4688g00043 210 Gene3D - 13 107 IPR036879 GO:0003677|GO:0046983
Pral4688g00043 210 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral4688g00043 210 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral4688g00043 210 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral4688g00043 210 Pfam K-box region 87 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral4688g00043 210 FunFam Agamous-like MADS-box protein AGL13 13 82 - -
Pral4688g00043 210 Coils Coil 121 170 - -
Pral4688g00043 210 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4688g00043 Pral-Chr4688 209110 214961 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4688g00043 1 208 MADS-box Gene Family AT4G22950 57.009 6.47e-71 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral4688g00043 K-box 2.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4688g00043 - - pcin:129323029 324.709