Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4688g00041 ATGGTGAGGGGAAAGACTCAGATGAAACGCATAGAAAATGATACAAGCAGGCAGGTCACCTTCTCCAAGCGAAGAAACGGGCTGCTTAAGAAGGCTTTCGAGCTGTCTGTGCTATGCGAAGCTGAAGTTGCACTCATTATCTTCTCGCCCAGAGGCAGGCTTTCTGAGTTCGCCAGTTCTAGTGTGAATAAAACGGTTGAACGCTACCTAAGGAAAGTTAAGGACCGGGGTCTGGGCACCAAAGGAAGCCAGGCAAATACGCAGGAAGGTACTATTAACATGACTAAGAAGATAGAGCATCTTGAAGTTCTTAAAAGGAAGCTTCTGGGAGATGGTTTGGATGCGTGTTCTATTGACGAGTTACGTCAGACAGAGAACCAGCTGGAACAAAGCTTAAGTAAAATTAGGGCAAGAAAGGATCAACTGTTGAAGGAACAGATCCAGGAGCTAAGAGAAGAGGAAAAGCGCTTACTGGACATAAATGAAGAGTTACGGGAGCAGTGTGGCGATGAACTGCGGCGGCGGAATTCGCCTGAAGAGCAGGATGTTGAGCACCGGAATGACGGAACGGATGGCGTGGAGACAGAGTTGGTTATAGGGCCACCAGAGAGACGAATGCCTTGA 624 0.4808 MVRGKTQMKRIENDTSRQVTFSKRRNGLLKKAFELSVLCEAEVALIIFSPRGRLSEFASSSVNKTVERYLRKVKDRGLGTKGSQANTQEGTINMTKKIEHLEVLKRKLLGDGLDACSIDELRQTENQLEQSLSKIRARKDQLLKEQIQELREEEKRLLDINEELREQCGDELRRRNSPEEQDVEHRNDGTDGVETELVIGPPERRMP 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4688g00041 207 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 173 - -
Pral4688g00041 207 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral4688g00041 207 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral4688g00041 207 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral4688g00041 207 MobiDBLite consensus disorder prediction 167 192 - -
Pral4688g00041 207 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677|GO:0046983
Pral4688g00041 207 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral4688g00041 207 CDD MADS_MEF2_like 3 70 IPR033896 GO:0000977|GO:0045944
Pral4688g00041 207 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral4688g00041 207 FunFam Agamous-like MADS-box protein AGL13 13 79 - -
Pral4688g00041 207 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral4688g00041 207 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral4688g00041 207 Coils Coil 118 167 - -
Pral4688g00041 207 MobiDBLite consensus disorder prediction 167 207 - -
Pral4688g00041 207 Gene3D - 13 104 IPR036879 GO:0003677|GO:0046983
Pral4688g00041 207 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pral4688g00041 207 Pfam K-box region 84 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4688g00041 Pral-Chr4688 209110 214961 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4688g00041 1 205 MADS-box Gene Family AT4G22950 57.820 3.95e-73 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral4688g00041 K-box 2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4688g00041 - - pcin:129323029 315.849