Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4688g00016 ATGAGAAGGCATCGTCAATTTCATCTCCCGCATGCTCTCTTGTGCTCTGTTCTCTGTCTTCTTTCATCTATCGCGGTCTCACCGGTGACTGAGAAGGAGATTTTGCTTCAATTTAAGGGTAACATTACAGATGATCCTCAAAACAGCCTGAGCTCATGGGTTTCGAGTGGAAACCCTTGTGAAGATTATAGAGGAGTTTTCTGTAACCCCGAAGGTTTTGTGGAAAGAATCGTACTATGGAACACTAGTTTGGCCGGAGTATTGGCGCCGGCTTTGTCTGGATTGAAATTCTTGAGGATTTTGACATTGTTCGGGAATCGTTTTTCGGGGAAGATTCCGGAAGAATACGGTGACATTCACTCATTGTGGAAAATCAATTTGAGCTCCAATGCATTATCTGGTTCAATCCCAGAGTTCATTGGTGACTTAGAAAGTATCCGCTTTCTGGATTTATCGAAGAATGAGTTCACCGCGGAGATTCCTTCGGCTCTGTTTAGGCACTGTTACAAAACCAGGTTCATTTCTCTTTCTCATAACAGTCTTTCAGGTATAATTCCAGCGTCATTGGCGAATTGCTCGAACCTTGAAGGTTTTGATTTTTCTTTCAACAATCTAAGAGGGGGTATTCCTTCTGGACTTTGTGATATTCCAAGATTATCCTACATGTCCTTGAGAAGCAATGCCTTATCAGGAACAGTGGAAGAGCAGATTGTGGGATGCCAAAGTTTGACACTTTTAGATCTTGGAGATAATGCATTCACTGGTTCAGCCCCTTTTAGCATCATTGGAACGAAGAATCTTACTTATTTCAATGTATCACGTAACGGTTTTAGTGGACAAATTCCAGGGAACACTGCTTGTAGCGAGAGATTACAGTTTTTTGATGCTTCGGGGAATGCTTTGGATGGGGAGATTCCCTCTAGTATAACAGGATGCAAAAGCCTCAAGCTATTGGCCTTGGAGTCTAATAGGTTGAAAGGGACTATCCCATTAGGGATTAAAGACATGGGAAGGCTACTTGTTATTAAATTAGGTAATAATTCAGTAAGTGGATCGATTCCCAAGGGGTTTGGCAACATTCAGCTGCTTGAAGTGCTTGATTTGCATAATCTAAACCTTGTCGGTGAAATTCCCGAAGATATAAGCAATTGTAGATTCCTTCTAGAGCTGAATGTTTCGGGTAATAACTTGGAAGGAGAGATTCCTCAGAACCTTAACAACTTAACATATCTGGAAGTCCTTGACCTGCATCAAAATCAGCTCAGTGGCAGCATCCCAACAAGCCTAGGAAACTTGTCAAAGATCCAATACCTAGATGTGTCACATAATTCACTTTCTGGTTCTATCCCTTCTTCCCTTGGGAATTTGAACAGACTGACACATTTTAATCTCTCATTTAACAATCTCTCTGGTATCATTCCACCAATTGCATCGATACAGAGTTTTGGTTCTTCAGCATTTTCCAACAACCCTTATCTTTGTGGGGTTCCTTTGGACACCCCTTGCTCAGCAAATGGCACTACAACACAGCCTACTTCTAGGAAGCCTAAACTAAGTGTCTCTGCAATTATTGCAATTGTTGCTGCAGCAGTGATTCTTATTGGGGTTTGTTTGGTGAGCATCATGAATATCAAGGCACGTCGTAAGAAAAAAGATGAACAGATGATGATAGTTGAGACTACGCCCCTTGGATCTACAGAATCAAATGTCATAATAGGAAAGCTGGTTCTCTTCAGCAAAAGTTTACCATCGAAGTATGAAGACTGGGAGGCAGGTACCAAAGCATTGCTTGATAAAGAGTCTTTGATCGGGCGAGGATCAATTGGGACAGTCTACAGAACTGATTTTGAAGGTGGGATCTCTATTGCAGTGAAAAAGCTTGAGACGTTGGGAAGAATCAGAAACCAAGATGAATTTGAGCATGAAATTGGGCGAATAAGTAACCTTCAACACCCTAATTTAGTTGCCTTTCAAGGTTACTATTGGTCCTCGACCATGCAGTTAATTCTATCAGAGTTTGTCTCAAATGGGAATCTCTACGATAATCTACATGGCTTTGGCTATCCCGGAACCAGCACTAGCCGCGGCAATAGGGAACTAAACTGGTCCAGAAGGTACCAAATTGCAGTTGGAACTGCAAGAGCCCTTGCCTACCTTCACCATGACTGTCGACCTCCGATTCTTCATCTCAACTTGAAGTCATCAAACATACTCTTAGATGACAGGTATGAGGCAAAGTTGTGTGATTATGGGCTAGGGAAGTTACTTCCCATGTTGGACAATTATGGTTTGACCAAATTCCACAATTCTGTTGGATATGTTGCACCAGAGTTGGCTCAGAGTATGAGACAGAGTGAGAAATGTGACGTGTATAGTTTTGGGGTTATTCTTTTGGAATTGGTCACAGGGAGGAAGCCCGTAGAAAGTCCAACAGCGAGCGAGGTCGTGGTTTTGTGTGATTATGTTAGAGGATTATTGGAGACTGGCTCAGCTTCACAATGCTTTGATACGAGGTTGCTGGGTTTTGTGGAGAACGAGTTAATTCAGGTGATGAGATTGGGGCTTATCTGTACGTCGGAGGATCCTTCAAGGAGACCAAGTATGGCTGAGGTTGTGCAGGTTCTTGAATCTATCAGAAATGGATTGGAATCAAATTAA 2658 0.4229 MRRHRQFHLPHALLCSVLCLLSSIAVSPVTEKEILLQFKGNITDDPQNSLSSWVSSGNPCEDYRGVFCNPEGFVERIVLWNTSLAGVLAPALSGLKFLRILTLFGNRFSGKIPEEYGDIHSLWKINLSSNALSGSIPEFIGDLESIRFLDLSKNEFTAEIPSALFRHCYKTRFISLSHNSLSGIIPASLANCSNLEGFDFSFNNLRGGIPSGLCDIPRLSYMSLRSNALSGTVEEQIVGCQSLTLLDLGDNAFTGSAPFSIIGTKNLTYFNVSRNGFSGQIPGNTACSERLQFFDASGNALDGEIPSSITGCKSLKLLALESNRLKGTIPLGIKDMGRLLVIKLGNNSVSGSIPKGFGNIQLLEVLDLHNLNLVGEIPEDISNCRFLLELNVSGNNLEGEIPQNLNNLTYLEVLDLHQNQLSGSIPTSLGNLSKIQYLDVSHNSLSGSIPSSLGNLNRLTHFNLSFNNLSGIIPPIASIQSFGSSAFSNNPYLCGVPLDTPCSANGTTTQPTSRKPKLSVSAIIAIVAAAVILIGVCLVSIMNIKARRKKKDEQMMIVETTPLGSTESNVIIGKLVLFSKSLPSKYEDWEAGTKALLDKESLIGRGSIGTVYRTDFEGGISIAVKKLETLGRIRNQDEFEHEIGRISNLQHPNLVAFQGYYWSSTMQLILSEFVSNGNLYDNLHGFGYPGTSTSRGNRELNWSRRYQIAVGTARALAYLHHDCRPPILHLNLKSSNILLDDRYEAKLCDYGLGKLLPMLDNYGLTKFHNSVGYVAPELAQSMRQSEKCDVYSFGVILLELVTGRKPVESPTASEVVVLCDYVRGLLETGSASQCFDTRLLGFVENELIQVMRLGLICTSEDPSRRPSMAEVVQVLESIRNGLESN 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4688g00016 885 SUPERFAMILY Outer arm dynein light chain 1 76 186 - -
Pral4688g00016 885 Pfam Leucine rich repeat 389 445 IPR001611 GO:0005515
Pral4688g00016 885 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 674 884 - -
Pral4688g00016 885 SUPERFAMILY Protein kinase-like (PK-like) 598 876 IPR011009 -
Pral4688g00016 885 Gene3D Phosphorylase Kinase; domain 1 567 673 - -
Pral4688g00016 885 FunFam Putative LRR receptor-like serine/threonine-protein kinase 574 673 - -
Pral4688g00016 885 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g12460 28 166 - -
Pral4688g00016 885 Gene3D Ribonuclease Inhibitor 30 142 IPR032675 -
Pral4688g00016 885 Pfam Protein kinase domain 599 873 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4688g00016 885 CDD STKc_IRAK 603 878 - -
Pral4688g00016 885 SMART LRR_typ_2 432 456 IPR003591 -
Pral4688g00016 885 SMART LRR_typ_2 408 431 IPR003591 -
Pral4688g00016 885 SMART LRR_typ_2 143 167 IPR003591 -
Pral4688g00016 885 Gene3D Transferase(Phosphotransferase) domain 1 674 884 - -
Pral4688g00016 885 ProSiteProfiles Protein kinase domain profile. 597 878 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4688g00016 885 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Pral4688g00016 885 Gene3D Ribonuclease Inhibitor 227 505 IPR032675 -
Pral4688g00016 885 Gene3D Ribonuclease Inhibitor 143 226 IPR032675 -
Pral4688g00016 885 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g12460 167 505 - -
Pral4688g00016 885 SUPERFAMILY L domain-like 166 494 - -
Pral4688g00016 885 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 172 307 IPR046959 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4688g00016 Pral-Chr4688 81822 85694 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4688g00016 23 884 Receptor kinase-like Gene Family AT1G62950 66.438 0.0 1125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Pral4688g00016 Pkinase 8.2e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4688g00016 - - gmx:100800970 1386.7