Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4686g00161 ATGAATGCGTTTTCACATGTTCCTCCAGGCTTTCGCTTCCACCCCACAGATGAAGAACTGGTTGATTATTACCTAAGAAAAAAGATAGCCTCCAAAAGGATTGACCTCGATGTTATTAAAGACGTGGATCTCTATAAAATTGAGCCGTGGGATCTTCAAGAACTATGTAAAATAGGAGCGGAAGAACAAAATGAGTGGTATTTCTTCAGCCATAAAGATAAGAAGTACCCAACTGGAACTCGAACGAATAGAGCCACAAAAGCTGGATTCTGGAAAGCCACAGGAAGAGACAAGGCAATCTACCGCAGGCATTGCCTCATTGGGATGAGAAAGACTCTTGTTTATTACAAGGGACGAGCCCCAAACGGACAGAAGTCTGACTGGATCATGCATGAGTACCGACTTGAAACTAATGAAAATGGGACTACTCAGGAAGAAGGTTGGGTTGTATGTCGAGTGTTCAAGAAGAAAATGACAAGCGTGCGGAGAGTGGGGGAGTATGAGTCACCATGCTGGTTTGAGGACCAGGTCTCCTTGATGCAAGAGCTTGAATCTGCAAGACCAATTTCTCAACCTTATGCATCTAATTACCACCACCATCAGTACTACGTACCTTGCAAGCAAGAACTTCAATTGCAATATAACGTAACCCATCCCCATGAAGTTTTCCTTCAGCTTCCCCAACTTGAAAGCCCCAGAGTTCCTTACTCAGCCGCTAGTCTGAGTTGCAATTCAACGTTCCCCTATGCCTATGACAGCAACAATAATGGAAGTAGCTTGCAGTCACCCAATTCACTCACTCAGGAAGAGCACACGCCTTGTGGAACCAATGATCAAGTGACTGATTGGCGAGTTCTTGATAAATTTGTGGCTTCTCAACTCAGCAGTCACCAGCAAGATGCTTCCAAGGAAGCCAGCTATTCCAACAATGCAGCAGTGCTCCGTGTGGATGGACCTATCACTATCCAGGCAAACGATCAACCTAAAAGGCCAGAAATTGCGCAGCAGGAATATGCCTCCACATCCAACTCCAGTTGCCAGATTGACCTGTGGAACTGA 1059 0.4533 MNAFSHVPPGFRFHPTDEELVDYYLRKKIASKRIDLDVIKDVDLYKIEPWDLQELCKIGAEEQNEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYRRHCLIGMRKTLVYYKGRAPNGQKSDWIMHEYRLETNENGTTQEEGWVVCRVFKKKMTSVRRVGEYESPCWFEDQVSLMQELESARPISQPYASNYHHHQYYVPCKQELQLQYNVTHPHEVFLQLPQLESPRVPYSAASLSCNSTFPYAYDSNNNGSSLQSPNSLTQEEHTPCGTNDQVTDWRVLDKFVASQLSSHQQDASKEASYSNNAAVLRVDGPITIQANDQPKRPEIAQQEYASTSNSSCQIDLWN 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4686g00161 352 Gene3D NAC domain 16 160 IPR036093 GO:0003677|GO:0006355
Pral4686g00161 352 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Pral4686g00161 352 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Pral4686g00161 352 FunFam NAC domain-containing protein 16 160 - -
Pral4686g00161 352 MobiDBLite consensus disorder prediction 254 278 - -
Pral4686g00161 352 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Pral4686g00161 352 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4686g00161 Pral-Chr4686 756878 760582 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4686g00161 1 350 NAC Transcription Factor Family AT1G62700 55.584 6.56e-140 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pral4686g00161 NAM 9.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4686g00161 - - tcc:18606319 544.273