Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4686g00104 ATGGAGAGGCACAAATGCAAGCTTTGCTCTCGAGCGTTCGCCAATGGCAGAGCGTTAGGTGGTCACATGAAGGCTCACTTGACCTCTCTTCCTCTTCCTCCCAAGCCCCACCCTCTGATCACTCCCTCTACGCTTTCCTTCTCTTATTCCTCTTCCGACGACGACGACGACGAAGAACAAATAGAAGTAGCGCCTGGTTACAGAGATTCCGACGACAAGGCTTTGAGTTATGGTTTGAGAGAGAATCCCAGGAAAAATTTCAGGTTCGCAGATCCTGAGTTCTCTTTTGCGGTTGATGCTGGCTCCGTCGTCCAGGACAGAGAAAGCGAGACCGAGTCAAAGAATCCGACTCGCCGGCGATCCAAGCGAAACCGAAAGTCCATCGTCGGGGCTAGTCAGAAATTTGAAGTGACCAGGGCCAAGTCAAATTTGACGGAGTCACCGACGGAGCCGGAACCGGTAAGCTCCGTTTCTGATACTTCGCCGGATGAAGATGTTGCCATGTGCCTCATGATGCTTTCGAGGGACAGATGGATGAGAAACGTCAAGGAACAAGATCAAGTTGAGAGATCCAAGGGGCCTGAAGAGATCAAGTTGAAGAGGAAGCATCAATCTAATAACGCTAAGAAAACTTGTCGATCTTCCCGAGCATTGGACACTCACAAGAGCACCTACTTTCCAGAAGAAGCAGAGAACAAAATTGCAGGTAACGATAAAATTTTCGAATGCCCATTCTGTTACAAAGTCTTTGGGTCGGGACAAGCTCTGGGTGGCCACAAGAGATCCCACCTCCTACCATCTTCGTCGTCCACTGCTATGAACTCTGCTAAATGTTCTATAGATCTCAACCTGCCAGCTCCGGCAGAAGAAGATGAACTAAGCGTGGTTTCTGATGCGTAA 900 0.4933 MERHKCKLCSRAFANGRALGGHMKAHLTSLPLPPKPHPLITPSTLSFSYSSSDDDDDEEQIEVAPGYRDSDDKALSYGLRENPRKNFRFADPEFSFAVDAGSVVQDRESETESKNPTRRRSKRNRKSIVGASQKFEVTRAKSNLTESPTEPEPVSSVSDTSPDEDVAMCLMMLSRDRWMRNVKEQDQVERSKGPEEIKLKRKHQSNNAKKTCRSSRALDTHKSTYFPEEAENKIAGNDKIFECPFCYKVFGSGQALGGHKRSHLLPSSSSTAMNSAKCSIDLNLPAPAEEDELSVVSDA 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4686g00104 299 SMART c2h2final6 241 263 IPR013087 -
Pral4686g00104 299 SMART c2h2final6 4 26 IPR013087 -
Pral4686g00104 299 MobiDBLite consensus disorder prediction 184 216 - -
Pral4686g00104 299 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Pral4686g00104 299 ProSitePatterns Zinc finger C2H2 type domain signature. 243 263 IPR013087 -
Pral4686g00104 299 Gene3D Classic Zinc Finger 176 264 - -
Pral4686g00104 299 MobiDBLite consensus disorder prediction 184 202 - -
Pral4686g00104 299 Pfam C2H2-type zinc finger 3 27 - -
Pral4686g00104 299 Pfam C2H2-type zinc finger 241 263 - -
Pral4686g00104 299 ProSiteProfiles Zinc finger C2H2 type domain profile. 241 263 IPR013087 -
Pral4686g00104 299 MobiDBLite consensus disorder prediction 136 162 - -
Pral4686g00104 299 SUPERFAMILY beta-beta-alpha zinc fingers 3 263 IPR036236 -
Pral4686g00104 299 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 299 IPR044303 GO:0006355
Pral4686g00104 299 MobiDBLite consensus disorder prediction 101 163 - -
Pral4686g00104 299 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4686g00104 Pral-Chr4686 501500 502645 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4686g00104 2 294 C2H2 Transcription Factor Family AT1G02030 38.750 9.26e-47 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4686g00104 zf-C2H2_6 9.8e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4686g00104 - - qsa:O6P43_034089 347.436