Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4686g00069 ATGGGTGAAAAGGAGGACCTGGGTTTGAGTCTCAGCTTGAACTTCCCCAACAATCCTCCTAATCCTCTCCAGCTTAATCTCCTCCCTTCTTCTACTTCTCTTGCTGCCTCCAATCTTCACAAACCCTCTTGGAACGATGCCTTCGCCTCTTCAGATCGAGATTTTGAAACATGCAGAGGCGAAGGTCGATCTTTCCTGCGAGGAATCGACGTGAATCGATTGCCTTCCGGGGTGGACTGCGAAGAGGAGGCGGGTGTTTCGTCTCCGAACAGCACGATCTCCAGCGTGAGTGGCAAGAGAAGTGAGAGAGAGCCCAACGGAGAAGAGCACGACGCCGACAGAGACTGTTCTCGAGGAATCAGCGACGAAGAAGACGCTGAAACCTCCAGGAAGAAGCTGAGGCTTTCAAAAGATCAATCCGCTATTCTCGAGGAAAGCTTTAAAGAGCACAATACCCTCAATCCCAAGCAAAAGTTGGCGCTTGCAAAGCAGCTGGGCCTTCGACCAAGACAAGTAGAGGTCTGGTTCCAGAACAGAAGGGCAAGGACCAAGCTGAAGCAAACTGAGGTAGATTGTGAGTTCTTAAAGAGATGCTGCGAGAATCTCACGGAAGAGAACAGGCGGTTGCAGAAGGAAGTTCAGGAGCTTAGAGCACTGAAACTCTCCCCACAGCTGTACATGCAAATGACCCCACCCACAACCCTCACCATGTGCCCGTCATGTGAGCGGGTCGCCGTGCCGCCCTACGCCGCCGCCGCCGTTGGCAGCAACCGCCCTCACCCGATGGCCCAAACTCATGCTCGTCCCATCCCCGTCGGCCCATGGGCTCCTGCGGCAGCTCCCATAGCTCACCGGCCCTTCGATGTTCTTCACCCGAGATCATGA 885 0.5446 MGEKEDLGLSLSLNFPNNPPNPLQLNLLPSSTSLAASNLHKPSWNDAFASSDRDFETCRGEGRSFLRGIDVNRLPSGVDCEEEAGVSSPNSTISSVSGKRSEREPNGEEHDADRDCSRGISDEEDAETSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQLYMQMTPPTTLTMCPSCERVAVPPYAAAAVGSNRPHPMAQTHARPIPVGPWAPAAAPIAHRPFDVLHPRS 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4686g00069 294 MobiDBLite consensus disorder prediction 80 135 - -
Pral4686g00069 294 MobiDBLite consensus disorder prediction 1 20 - -
Pral4686g00069 294 SMART halz 186 229 IPR003106 GO:0006355|GO:0043565
Pral4686g00069 294 ProSiteProfiles 'Homeobox' domain profile. 126 186 IPR001356 GO:0003677
Pral4686g00069 294 FunFam Homeobox-leucine zipper protein 18 114 191 - -
Pral4686g00069 294 Pfam Homeobox associated leucine zipper 186 220 IPR003106 GO:0006355|GO:0043565
Pral4686g00069 294 CDD homeodomain 130 187 IPR001356 GO:0003677
Pral4686g00069 294 ProSitePatterns 'Homeobox' domain signature. 161 184 IPR017970 GO:0000981|GO:0006355
Pral4686g00069 294 Gene3D - 134 184 - -
Pral4686g00069 294 PRINTS Lambda-repressor HTH signature 166 182 IPR000047 GO:0003677
Pral4686g00069 294 PRINTS Lambda-repressor HTH signature 157 166 IPR000047 GO:0003677
Pral4686g00069 294 MobiDBLite consensus disorder prediction 85 100 - -
Pral4686g00069 294 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 8 255 - -
Pral4686g00069 294 Pfam HD-ZIP protein N terminus 1 104 IPR006712 GO:0005634
Pral4686g00069 294 SUPERFAMILY Homeodomain-like 121 187 IPR009057 -
Pral4686g00069 294 SMART HOX_1 128 190 IPR001356 GO:0003677
Pral4686g00069 294 Pfam Homeodomain 130 184 IPR001356 GO:0003677
Pral4686g00069 294 MobiDBLite consensus disorder prediction 101 135 - -
Pral4686g00069 294 Coils Coil 185 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4686g00069 Pral-Chr4686 354235 356157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4686g00069 1 294 Homeobox Transcription Factor Family AT5G47370 61.364 2.92e-113 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral4686g00069 HD-ZIP_N 3.6e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4686g00069 K09338 - vvi:100246436 420.239