Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4686g00059 CGCAACGCCAAACCCCAAATCCAAGCTTCGCAATTCGAAACAAGGTTCCCTAAACTCGAATCCAATACAGAAGAAAGCTCTCCGTCAAACAGTTGCGTGTTGGACTTCGACCCAAGACCTCATGAATCGCAGAAGAAATCTCCTTCAAGTAGGAAACCGGCGTTGCAAATCTCGCTTCCGAAGAAAACCGAATGGATCCAGTTTGGGAATCCGGAGCAGCAAGAGGAGGCGGCGGAGATGTTGGAGCAGAAAAACACAAAGGAAGTCGAGAAAAAGCACTACAGAGGAGTCCGACAGAGGCCGTGGGGAAAGTATGCAGCGGAGATCCGAGACCCGAACAAACGGGGATCCAGGGTGTGGTTAGGAACATTTGACACAGCGATTGAAGCCGCCAAAGCCTACGATCGAGCTGCCTTTAAGCTTCGCGGCTCCAAAGCCATCCTAAACTTCCCTTTGGAAATAGAAACATCGAGCTCGGCGCCTAGCTCCGGCGAGGGAAAACGCCGTCGTCAAGACGAACACAAGGTGTCGGAAGTGGAGGTAAAGCCGGTGGTGAAGAAGGCGAAAACGACGACGGAGTCTCAGGAGAACTGTGCAAAGGACGCTCCGTTAACGCCGTCTAACTGGAAGGGGTTCTGGGACAACGATTTAAACGGGATTTTCAGTGTCCCGCCGTTATCGCCGTTATCTCCACTTCCCACCTTGGGTTGTCCCCAGCTTATGGTCGTATGA 732 0.5232 RNAKPQIQASQFETRFPKLESNTEESSPSNSCVLDFDPRPHESQKKSPSSRKPALQISLPKKTEWIQFGNPEQQEEAAEMLEQKNTKEVEKKHYRGVRQRPWGKYAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFKLRGSKAILNFPLEIETSSSAPSSGEGKRRRQDEHKVSEVEVKPVVKKAKTTTESQENCAKDAPLTPSNWKGFWDNDLNGIFSVPPLSPLSPLPTLGCPQLMVV 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4686g00059 243 CDD AP2 92 151 IPR001471 GO:0003700|GO:0006355
Pral4686g00059 243 MobiDBLite consensus disorder prediction 77 96 - -
Pral4686g00059 243 MobiDBLite consensus disorder prediction 74 96 - -
Pral4686g00059 243 Gene3D AP2/ERF domain 92 153 IPR036955 GO:0003700|GO:0006355
Pral4686g00059 243 SMART rav1_2 93 157 IPR001471 GO:0003700|GO:0006355
Pral4686g00059 243 MobiDBLite consensus disorder prediction 1 56 - -
Pral4686g00059 243 ProSiteProfiles AP2/ERF domain profile. 93 151 IPR001471 GO:0003700|GO:0006355
Pral4686g00059 243 FunFam Ethylene-responsive transcription factor 2 92 153 - -
Pral4686g00059 243 Pfam AP2 domain 93 143 IPR001471 GO:0003700|GO:0006355
Pral4686g00059 243 MobiDBLite consensus disorder prediction 1 33 - -
Pral4686g00059 243 MobiDBLite consensus disorder prediction 156 177 - -
Pral4686g00059 243 SUPERFAMILY DNA-binding domain 93 153 IPR016177 GO:0003677
Pral4686g00059 243 PANTHER DNA-BINDING DOMAIN 42 190 IPR044808 GO:0003700|GO:0009873
Pral4686g00059 243 PRINTS Ethylene responsive element binding protein signature 94 105 IPR001471 GO:0003700|GO:0006355
Pral4686g00059 243 PRINTS Ethylene responsive element binding protein signature 133 153 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4686g00059 Pral-Chr4686 322006 322856 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4686g00059 29 243 AP2-EREBP Transcription Factor Family AT5G47230 54.505 3.70e-66 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral4686g00059 AP2 3.1e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4686g00059 K09286 - qsa:O6P43_034054 244.973