Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4686g00028 ATGGGAAAGCAAGGTCCTTGCTATCACTGTGGAGTTACAAGCACACCACTTTGGCGCAATGGCCCGCCAGAGAAACCAGTATTGTGCAATGCGTGTGGTTCTCGATGGAGGACAAAGGGAACACTTGCAAATTATACTCCATTACATGCTCGGACAGAAACTGATGACTGTGAGGATCAAAGGTTTTCAAGAGTAAAGAGCATATCACTAAATAAGAACAAAGAAGTGAAATTGTCTAAACGAAAGCAGAATGAAGACAATTTATTAACTGGAGTGGCTGGTCTTGATTACAACCAAGGATTCCGAAAGGCGACAGATGAAGATACAAGCAATAGATCAAGTTCAGGATCAGCCATCTCTAACTCAGAGAGTTGTGCTCAATTTGGTAGCACTGATGCTAGTGATTTGACAGGTCCTGCTCAGTCAGTTGTTTGGGATGCTATGGTGCCTTCAAAGAAGAGGACATGTGTTGGTCGTCCAAAGCAATCTTCTGTTGAGAAGCTTACAAAAGATCTGTACACTATTCTTCATGAACAACAGTCTTATTTTTCTGCATCCTCTGAGGAGGATCTTCTTTTTGAAAGTGAAACACCAATGGTCTCTGTTGAGATAGGGCATGGAAGCGTTCTTATTAGGCACCCAAGCTCTATAGCTCGTGAAGAGGAGTCTGAGGCCAGCTCTCTTTCAGTTGATCACAAACAGTGCCCAACCAGTGAGGGATTTTCATGTTCTGGTACCGTTCATGTGCATAATGGTTATAGTGGTGTGAATTTTCCATCTCTGGGGGTTCAGAAGATCAGGAGCTCTGCTGGCCAAGGAATGCTGCAAGAGCAACTTAAGAGGGACAAGACTCAACATGATAAGGTTCAAATCCTTGGAAATAAGTCACCACTGTGCTCGGTAGATTTAAATGATGTCATTAACTATGATGAATTTATGGGGACCTTGACAAACGAAGAGCAGCAACAGTTACTCCAGTGTCTCACTGCAGTTGATACTACTAAACTTCCTGATAGCCTGGAAAGCATGTTTAGCAGCTCCCAATTCAAGGAGAACTTGAATTATTTTCAGCAGCTTCTCGCAGAAGGTGTCTTTGATATCTCCTTATCAGGGACTAAACCTGAAGACTGCAAGACTTTGAAAAGGCTTGCATTATCCAATCTGTCAAAATCTAAATGGGTGGAACATTATAACTTACTTAAGAAAAATAGGAACAGAGCTGGAAAATCTGTTGCTTCGGGTTATTCCGGCACTTCATTTAGTAATGCTGCAAATGTCAAGAGATATCATGACAGCCAAAGTAAAACTTTATCAGAATTGAAGACCACAATGAGGAGTCCTAAAAGGGTGATGATGAAGGTTGGCTGTGAGGCCAAGGAAGCTGAAGACTATGGTTCTTGTTTCAGTCCAAAAAGCCTATTTGCTTTACCTTCTGATGGTGAGGCCCTTATGCTGGACTCTTTCACTTTTGTTGAGGAGAGTGGTGATCAGGATCTGCTGCTAGAGGTACCATCCAATGGTTCTTTTCCAGAGGCAGAGCTTTTGCACCCAACTTTAAGCTTTGGTGCTCAAGCCAGCACCGGTAGTAGTTCAATATACCCTCATATTGTTCGTCCCTGA 1620 0.4272 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARTETDDCEDQRFSRVKSISLNKNKEVKLSKRKQNEDNLLTGVAGLDYNQGFRKATDEDTSNRSSSGSAISNSESCAQFGSTDASDLTGPAQSVVWDAMVPSKKRTCVGRPKQSSVEKLTKDLYTILHEQQSYFSASSEEDLLFESETPMVSVEIGHGSVLIRHPSSIAREEESEASSLSVDHKQCPTSEGFSCSGTVHVHNGYSGVNFPSLGVQKIRSSAGQGMLQEQLKRDKTQHDKVQILGNKSPLCSVDLNDVINYDEFMGTLTNEEQQQLLQCLTAVDTTKLPDSLESMFSSSQFKENLNYFQQLLAEGVFDISLSGTKPEDCKTLKRLALSNLSKSKWVEHYNLLKKNRNRAGKSVASGYSGTSFSNAANVKRYHDSQSKTLSELKTTMRSPKRVMMKVGCEAKEAEDYGSCFSPKSLFALPSDGEALMLDSFTFVEESGDQDLLLEVPSNGSFPEAELLHPTLSFGAQASTGSSSIYPHIVRP 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4686g00028 539 PANTHER OSJNBB0038F03.10 PROTEIN 1 531 IPR044589 -
Pral4686g00028 539 Gene3D - 288 387 IPR038108 -
Pral4686g00028 539 Gene3D - 3 87 IPR013088 GO:0006355|GO:0008270
Pral4686g00028 539 FunFam GATA transcription factor 27 3 85 - -
Pral4686g00028 539 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Pral4686g00028 539 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Pral4686g00028 539 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Pral4686g00028 539 MobiDBLite consensus disorder prediction 101 133 - -
Pral4686g00028 539 Pfam Asx homology domain 281 366 IPR028020 -
Pral4686g00028 539 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Pral4686g00028 539 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Pral4686g00028 539 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 294 406 IPR044867 -
Pral4686g00028 539 MobiDBLite consensus disorder prediction 110 133 - -
Pral4686g00028 539 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4686g00028 Pral-Chr4686 160733 167173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4686g00028 1 516 C2C2-Gata Transcription Factor Family AT4G17570 54.839 5.14e-169 487
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pral4686g00028 ASXH 7.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4686g00028 - - gmx:100798504 787.334