Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4686g00027 ATGCTCCACGCCTTTGTAAGGATAAGTGTTCAAAGGAGATCTTTTCTGAATAACAACATCATGGGTGAACGGGACTTGGCTGTGGATGACAAGGAATTGAAAAAAGTCACGGCCTCTGATGTGAATGAAGTGGAAAAGAACGTTGAATATGGAGATGCTTGCAATCCAGTGAATATAGTTCAAGGTGATTTTGAAGGGAATGTTATGCGGGAAGTGAATAAGTTGGATGGATTGGAAGCATCTTCTGAGATGGACTTGCTACCAAAAAATCCAGGAGATAAGGGCATTGCGCTTCTTCATGGAAGCAATCACAATCAGGTATTAACAAGTTCCCCAACAGCAGCTGAAGAAGAAAGCAGAGATGCTGTGCTGGTTGAGGGAACACTAGGAAAGGAGATAGTAGTTTATTCAGGAGCCCAAAGCCTTGTGACAGAGCCTCTGGGTACATCTGCCTGCCATCATAAGTCAAAAGGAGATTTCAGTGAATTGCAGGCTCGATCTAGCAGGATGGTTGTGCTAGGTCTGATGTCTCAATCGACATGTCCTTGGAGGAACACTATAGGTTCTTCCAAATTCAGTATGGTTGGTGATAAAAATGAAAGAAAGGGAAAGGGAAAGAAAATTGATTTTTTTGAACGGTTTGACAGGTCTAAAGTTGCTACCAAGTCTAGCGACTCGCCAAGTTGTTCTAGAAAGAAGGCTGTAGTAAAGAAAAAAGGAAGCTGTGCTGCTGAAGGTATGGGTCAACTAGTAGTTTGGGAGGATAAAGGTACGCTTGACTCTGATAAAAATATGGAAGAGAAAAGTATTATCCCAAGATCCCAAGGTTTTGATGTTTATGTTCCTCCTTTTAGTCATGGAAATCTAAATGGTAATGATGAGGACTCAAATGTGACTCGAAATAAAGTGAGGGAGACATTGCGCCTTTTTCAAGTTGTTACTAGAAAACTATTGCAGGAGGAAGAAGCAAAGTCAAAGAACAAAGCGAACAATAATAAGAAGATGAGGATCGATACAATAGCAGCCAAGATCCTTAAGAATAAAGGGAAATATGTTAACACAGGGAAGCCGATCGTGGGACTTGTCCCTGGGGTTGAAGTTGGTGATGAATTTCAGTACTGGGTGGAGCTTAACATGATTGGCCTTCATCGTCAATCTCAGGCTGGCATAGATTATGTAATGTATAACGGTAAGATCCTTGCAACTAGTGTGGTTTCATCTAAGGGCTATGCTGATGAGTTGGGCAGTTCAGATGTGTTGACTTATACAGGACAGGGAGGAGGTATGTTGAAGAATGGCAAAGAACCTGAAGATCAGAAGCTCGAGAGGGGCAATCTTGCTTTGAAGAATAGTGTTGCTGAAAAGAATCCTGTCAGGGTAATACGTGGCTGTGAATCAACAGATGGAAAAAGTAGGAGATATGTTTATGACGGTCTCTATGAAGTGGAGGCTTATTGGCAGGAAATGGGACCACATGGTAAGTTGGTTTTTAGGTTTCGACTGCGAAGAATCCCAGGTCAACCAGAACTTGCTTGGAAAGAAGTGAAAGAATGCAAAAAATTCAAAAAAAGAGAGGGTGTTTGTGTTGATGACATTTCTAATGGGAAAGAGCCAATTCCAATATGTGCTGTGAACACCATAGATGATGAAAAACCCCCGCCATTTGAATACACAACTAGAATGATATATCCTAACTGGTGCAATCCCATTCCTCCAGAGGGATGTAATTGTACAAATGGATGCTCTGACTCTGACAAATGTTCTTGTGCGGTCAAAAATGGGGGAGAGATCCCTTACAATCATAATGGAGCCATTGTAGAAGCAAAGCCTCTTGTGTATGAGTGTGGTGCTTCTTGCAAGTGTCCTTCAACATGTCATAACAGAGTCAGCCAACATGGGATAAAATTTCAACTTGAAATTTTTAAAACCAAGACAAGAGGATGGGGTGTGAGATCCTTAAATTCCATTTCTTCAGGAAGTTTTATCTGTGAATATATAGGAGAGCTTCTTGAAGAGAAGGAAGCAGAACAAAGAACTGGTAATGATGAATATCTATTTGATATCGGGAATAGCACCAACAGTACTCTTTGGGATGGACTTTCAAGCCTAATGCCTGAGGCACAGTCAAGTTCTTGTGAAATTGTGGAAAATAGTGGTTTCACCATTGATGCTGCCCAGTATGGCAATGTTGGGAGATTTATCAACCATAGTTGCTCCCCTAATCTTTATGCTCAAAATGTTCTTTATGATCATGATGACAGGAGAATACCTCATATTATGTTTTTTGCTGCTGCTGAAAATATTCCTCCTCTGCAAGAGCTGTGTTATGATTACAATTATATGATAGATCAAGTTTATGATTCTGATGGCAATATAAAGAGGAAGGACTGCTTTTGTGGTTCTGCAGAGTGCACTGGTAGGATGTACTGA 2430 0.4086 MLHAFVRISVQRRSFLNNNIMGERDLAVDDKELKKVTASDVNEVEKNVEYGDACNPVNIVQGDFEGNVMREVNKLDGLEASSEMDLLPKNPGDKGIALLHGSNHNQVLTSSPTAAEEESRDAVLVEGTLGKEIVVYSGAQSLVTEPLGTSACHHKSKGDFSELQARSSRMVVLGLMSQSTCPWRNTIGSSKFSMVGDKNERKGKGKKIDFFERFDRSKVATKSSDSPSCSRKKAVVKKKGSCAAEGMGQLVVWEDKGTLDSDKNMEEKSIIPRSQGFDVYVPPFSHGNLNGNDEDSNVTRNKVRETLRLFQVVTRKLLQEEEAKSKNKANNNKKMRIDTIAAKILKNKGKYVNTGKPIVGLVPGVEVGDEFQYWVELNMIGLHRQSQAGIDYVMYNGKILATSVVSSKGYADELGSSDVLTYTGQGGGMLKNGKEPEDQKLERGNLALKNSVAEKNPVRVIRGCESTDGKSRRYVYDGLYEVEAYWQEMGPHGKLVFRFRLRRIPGQPELAWKEVKECKKFKKREGVCVDDISNGKEPIPICAVNTIDDEKPPPFEYTTRMIYPNWCNPIPPEGCNCTNGCSDSDKCSCAVKNGGEIPYNHNGAIVEAKPLVYECGASCKCPSTCHNRVSQHGIKFQLEIFKTKTRGWGVRSLNSISSGSFICEYIGELLEEKEAEQRTGNDEYLFDIGNSTNSTLWDGLSSLMPEAQSSSCEIVENSGFTIDAAQYGNVGRFINHSCSPNLYAQNVLYDHDDRRIPHIMFFAAAENIPPLQELCYDYNYMIDQVYDSDGNIKRKDCFCGSAECTGRMY 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4686g00027 809 Pfam SET domain 647 779 IPR001214 GO:0005515
Pral4686g00027 809 Coils Coil 318 338 - -
Pral4686g00027 809 Gene3D - 341 523 IPR036987 -
Pral4686g00027 809 ProSiteProfiles Post-SET domain profile. 793 809 IPR003616 -
Pral4686g00027 809 CDD SET_AtSUVH-like 553 780 - -
Pral4686g00027 809 Pfam Pre-SET motif 532 628 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pral4686g00027 809 SMART preset_2 529 620 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pral4686g00027 809 SUPERFAMILY PUA domain-like 342 516 IPR015947 -
Pral4686g00027 809 ProSiteProfiles Pre-SET domain profile. 573 633 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pral4686g00027 809 ProSiteProfiles YDG domain profile. 360 503 IPR003105 -
Pral4686g00027 809 ProSiteProfiles SET domain profile. 636 779 IPR001214 GO:0005515
Pral4686g00027 809 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 208 803 - -
Pral4686g00027 809 SMART G9a_1 355 507 IPR003105 -
Pral4686g00027 809 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 211 809 IPR025794 GO:0016571
Pral4686g00027 809 SMART set_7 636 785 IPR001214 GO:0005515
Pral4686g00027 809 SMART PostSET_3 793 809 IPR003616 -
Pral4686g00027 809 Pfam SAD/SRA domain 359 507 IPR003105 -
Pral4686g00027 809 Gene3D SET domain 524 809 IPR046341 -
Pral4686g00027 809 SUPERFAMILY SET domain 519 780 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4686g00027 Pral-Chr4686 149401 155124 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4686g00027 297 806 Su(var)3-9 homologs AT5G04940 40.797 3.79e-119 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pral4686g00027 SAD_SRA 3.6e-47 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4686g00027 K11420 - gmx:100803378 935.25