Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4686g00026 ATGGAGCTTCATTCTAAAAACCAGGCGGTCGTTGTTTGTGTACTGCTCTTACCTGCACTATGCATATCCCAAAGCTTCACAGACTCCAGAGCCACCTATTATAGCACCCCCGATGGCTATGGAACTTCAACTGGAGCTTGTGGATACGGCGATTACGGCAGAACTATCAACCATGGGAGGGTTGCAGGCGTGTCTGGCTTATGGAGAGATGGCGCCGGATGTGGTGCTTGCTACCAAGTAAGGTGCAAGAATTCAAGATTATGCCATAGCTCCGGCACCATGGTAGTGGCAACAGACTACGGCGCAGGAGACAGAACAGATTTCATTATGAGTCCAAATGGTTTCTCAAAACTGGGACGAAACCCAAGCGCATCGGCGGAGCTCAATAAATACGGCGTCGTAGACATCGAATACAGGAGGGTTCCCTGCACATATGCAGGTTCCAAAGTACGTATCAAGATCCACGAGGCCAGCAATTACCCATACTACCTTGCTATTGTCATTCTTTATGTGCCCGGAATGGACGACGTCACCGCCGTTGAGATTTATGACAATGATGGGCATGAATGGAAGCCGATGAGAAGAGTGTACGGGACAGTGTTTGATATAGTTGGCGCACCAAGTGGACCAATGAACCTGAGGCTGCAACTCGGTGGTAAAACAGGTTGGGTTCAGTCGTTCAAGAGCGCTATTCCTGCTGACTGGAAGATTGGAGTTTCTTACGACTCTCAAGTAGTTCATGTCTAA 747 0.4886 MELHSKNQAVVVCVLLLPALCISQSFTDSRATYYSTPDGYGTSTGACGYGDYGRTINHGRVAGVSGLWRDGAGCGACYQVRCKNSRLCHSSGTMVVATDYGAGDRTDFIMSPNGFSKLGRNPSASAELNKYGVVDIEYRRVPCTYAGSKVRIKIHEASNYPYYLAIVILYVPGMDDVTAVEIYDNDGHEWKPMRRVYGTVFDIVGAPSGPMNLRLQLGGKTGWVQSFKSAIPADWKIGVSYDSQVVHV 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4686g00026 248 CDD DPBB_EXLB_N 27 143 - -
Pral4686g00026 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 148 IPR007112 -
Pral4686g00026 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 243 IPR007117 -
Pral4686g00026 248 Pfam Expansin C-terminal domain 150 232 IPR007117 -
Pral4686g00026 248 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Pral4686g00026 248 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Pral4686g00026 248 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576
Pral4686g00026 248 PRINTS Expansin/Lol pI family signature 131 147 IPR007118 GO:0005576
Pral4686g00026 248 Gene3D - 144 244 IPR036749 -
Pral4686g00026 248 PANTHER EXPANSIN-B3 14 245 - -
Pral4686g00026 248 SUPERFAMILY Barwin-like endoglucanases 12 147 IPR036908 -
Pral4686g00026 248 Gene3D - 19 143 IPR036908 -
Pral4686g00026 248 Pfam Lytic transglycolase 61 138 IPR009009 -
Pral4686g00026 248 SUPERFAMILY PHL pollen allergen 149 243 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4686g00026 Pral-Chr4686 137003 138486 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4686g00026 11 246 Expansin Gene Family AT4G17030 50.628 4.93e-83 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4686g00026 - - gmx:100779487 312.768