LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4686g00025	ATGGAGCTTCATTCAAAATACCAGGTTGGCCTTGCTTGCGTGCTGCTGCTCCTGCCTGCACTATGTTTATCACAAGGCTTCACAGACTCCAGAGCCACCTATTATAGTACCCCAGATGGTTATGGAACTCCAAGTGGAGCTTGTGGATATGGAGATTACGGCAGAACTGTGAACTATGGGATGGTTGCAGGCGTGTCTGGCTTATGGAGAGGCGGCGCTGGATGCGGCGCTTGCTACCAAGTAAGGTGTAAGAACTCGAGATTATGCGATAGCTACGGCACGATGGTAGTGGCCACAGACTACGGTGCCGGAGACAGAACAGACTTCATTATGAGTCCAAATGGTTTCTCAAAACTGGGACGAAACCCTAGCGCATCGGCGGAGCTCAAGAAATACGGCGTCGTTGACATTGAATACAGGAGGGTGCCCTGCACATATGCTGGCTACAACGTGAAGATCAAGATCCACGAGTCCAGCAGATACCCAGACTATCTTGCTCTTGTCATTCTGTACGTGCCCGGAATGAAAGACGTCACCGCCGTTGAGATTTATGACAGTTATCGCCATGAGTGGAAGCCAATGAGAAGAGCGTACGGGGCAGTGTTTGATATAGTTGGCGCACCACGCGGACCATTGATGCTGAGGTTGCAATTCAGTGGAAGAACAGGTTGGGTACAATCTACCAAGAGTGCCATTCCTGCAGATTGGAAGATTGGAACTTCTTATGATTCTCAAGTTCGTGTCTAA	747	0.4967	MELHSKYQVGLACVLLLLPALCLSQGFTDSRATYYSTPDGYGTPSGACGYGDYGRTVNYGMVAGVSGLWRGGAGCGACYQVRCKNSRLCDSYGTMVVATDYGAGDRTDFIMSPNGFSKLGRNPSASAELKKYGVVDIEYRRVPCTYAGYNVKIKIHESSRYPDYLALVILYVPGMKDVTAVEIYDSYRHEWKPMRRAYGAVFDIVGAPRGPLMLRLQFSGRTGWVQSTKSAIPADWKIGTSYDSQVRV	248

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4686g00025	248	ProSiteProfiles	Expansin, family-45 endoglucanase-like domain profile.	45	149	IPR007112	-
	Pral4686g00025	248	SUPERFAMILY	PHL pollen allergen	150	244	IPR036749	-
	Pral4686g00025	248	SUPERFAMILY	Barwin-like endoglucanases	14	148	IPR036908	-
	Pral4686g00025	248	Pfam	Expansin C-terminal domain	151	233	IPR007117	-
	Pral4686g00025	248	ProSiteProfiles	Expansin, Cellulose-binding-like domain profile.	163	244	IPR007117	-
	Pral4686g00025	248	Pfam	Lytic transglycolase	62	139	IPR009009	-
	Pral4686g00025	248	PANTHER	EXPANSIN-B3	17	247	-	-
	Pral4686g00025	248	CDD	DPBB_EXLB_N	28	144	-	-
	Pral4686g00025	248	Gene3D	-	20	144	IPR036908	-
	Pral4686g00025	248	PRINTS	Expansin/Lol pI family signature	132	148	IPR007118	GO:0005576

Showing 1 to 10 of 15 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4686g00025	Pral-Chr4686	133473	135060	Dispersed/Tandem

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4686g00025	14	246	Expansin Gene Family	AT4G17030	52.542	3.15e-84	249

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4686g00025	-		-	gmx:100779487	326.25

Showing 1 to 1 of 1 entries