Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4686g00025 ATGGAGCTTCATTCAAAATACCAGGTTGGCCTTGCTTGCGTGCTGCTGCTCCTGCCTGCACTATGTTTATCACAAGGCTTCACAGACTCCAGAGCCACCTATTATAGTACCCCAGATGGTTATGGAACTCCAAGTGGAGCTTGTGGATATGGAGATTACGGCAGAACTGTGAACTATGGGATGGTTGCAGGCGTGTCTGGCTTATGGAGAGGCGGCGCTGGATGCGGCGCTTGCTACCAAGTAAGGTGTAAGAACTCGAGATTATGCGATAGCTACGGCACGATGGTAGTGGCCACAGACTACGGTGCCGGAGACAGAACAGACTTCATTATGAGTCCAAATGGTTTCTCAAAACTGGGACGAAACCCTAGCGCATCGGCGGAGCTCAAGAAATACGGCGTCGTTGACATTGAATACAGGAGGGTGCCCTGCACATATGCTGGCTACAACGTGAAGATCAAGATCCACGAGTCCAGCAGATACCCAGACTATCTTGCTCTTGTCATTCTGTACGTGCCCGGAATGAAAGACGTCACCGCCGTTGAGATTTATGACAGTTATCGCCATGAGTGGAAGCCAATGAGAAGAGCGTACGGGGCAGTGTTTGATATAGTTGGCGCACCACGCGGACCATTGATGCTGAGGTTGCAATTCAGTGGAAGAACAGGTTGGGTACAATCTACCAAGAGTGCCATTCCTGCAGATTGGAAGATTGGAACTTCTTATGATTCTCAAGTTCGTGTCTAA 747 0.4967 MELHSKYQVGLACVLLLLPALCLSQGFTDSRATYYSTPDGYGTPSGACGYGDYGRTVNYGMVAGVSGLWRGGAGCGACYQVRCKNSRLCDSYGTMVVATDYGAGDRTDFIMSPNGFSKLGRNPSASAELKKYGVVDIEYRRVPCTYAGYNVKIKIHESSRYPDYLALVILYVPGMKDVTAVEIYDSYRHEWKPMRRAYGAVFDIVGAPRGPLMLRLQFSGRTGWVQSTKSAIPADWKIGTSYDSQVRV 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4686g00025 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 149 IPR007112 -
Pral4686g00025 248 SUPERFAMILY PHL pollen allergen 150 244 IPR036749 -
Pral4686g00025 248 SUPERFAMILY Barwin-like endoglucanases 14 148 IPR036908 -
Pral4686g00025 248 Pfam Expansin C-terminal domain 151 233 IPR007117 -
Pral4686g00025 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 163 244 IPR007117 -
Pral4686g00025 248 Pfam Lytic transglycolase 62 139 IPR009009 -
Pral4686g00025 248 PANTHER EXPANSIN-B3 17 247 - -
Pral4686g00025 248 CDD DPBB_EXLB_N 28 144 - -
Pral4686g00025 248 Gene3D - 20 144 IPR036908 -
Pral4686g00025 248 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576
Pral4686g00025 248 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Pral4686g00025 248 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
Pral4686g00025 248 PRINTS Expansin/Lol pI family signature 191 205 IPR007118 GO:0005576
Pral4686g00025 248 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Pral4686g00025 248 Gene3D - 145 245 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4686g00025 Pral-Chr4686 133473 135060 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4686g00025 14 246 Expansin Gene Family AT4G17030 52.542 3.15e-84 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4686g00025 - - gmx:100779487 326.25