Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4686g00024 ATGGAACATCATTCTAAATACCAAATGGCTATTGTTTGGGTGATGCTGTTCTTACCTGCCGCACTAAGCTACTCTTACGGCTTCACTCCCTCCAGAGCTACCTATTATGGTGGCTACGGAAATCCAAGGGGAGCTTGTGGATATGGTGATTACGGCAGAACTGCAAACCAAGGGAGGGTTGCAGCCGTGTCTGGGCTATGGAGAGGAGGCGCCGGATGTGGTGCTTGCTACCAAGTGAGGTGCAAGAATCCAAGACTATGCGATAACGACGGCACGACGGTAGTGGCCACAGACTACGGTGCAGGGGACAGAACAGACTTCATTATGAGCCCAAATGCTTTCAAAGATCTGGGACGAAATCCGAGAGCATCAGAAGAGCTCAAGAAATACGGCGTCGTTGACATCGAATACAGGAGGGTACCCTGCAGATTTGCTGGCTATAACGTGCGTATCAAGATCCACGAATCAAGCAAATACCCATATTACCTTGCTATTGTGATTCAATACGTGCCTGGAATGAGCGACGTCACTGCCGTTGAGATATATCAGAATGATCGCCATGAATGGAGGCCAATGAGAAGAGCGTACGGGGCAGTGTTTGATATAGTTGGCGCACCACGTGGACCATTGATGCTGAGGCTGCGATTCAGTGGAAGAACAGGCTGGGCGCAGTCGACCAAGAGTGCAATTCCTGGTGATTGGAAGGTTGGAGCTTCCTATGATTCTCAAGTTCAAGTCTAA 741 0.4953 MEHHSKYQMAIVWVMLFLPAALSYSYGFTPSRATYYGGYGNPRGACGYGDYGRTANQGRVAAVSGLWRGGAGCGACYQVRCKNPRLCDNDGTTVVATDYGAGDRTDFIMSPNAFKDLGRNPRASEELKKYGVVDIEYRRVPCRFAGYNVRIKIHESSKYPYYLAIVIQYVPGMSDVTAVEIYQNDRHEWRPMRRAYGAVFDIVGAPRGPLMLRLRFSGRTGWAQSTKSAIPGDWKVGASYDSQVQV 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4686g00024 246 PANTHER EXPANSIN-B3 18 245 - -
Pral4686g00024 246 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 147 IPR007112 -
Pral4686g00024 246 SMART dpbb_1 60 137 IPR007112 -
Pral4686g00024 246 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 161 242 IPR007117 -
Pral4686g00024 246 Pfam Lytic transglycolase 64 137 IPR009009 -
Pral4686g00024 246 Gene3D - 18 143 IPR036908 -
Pral4686g00024 246 PRINTS Expansin/Lol pI family signature 189 203 IPR007118 GO:0005576
Pral4686g00024 246 PRINTS Expansin/Lol pI family signature 228 242 IPR007118 GO:0005576
Pral4686g00024 246 PRINTS Expansin/Lol pI family signature 130 146 IPR007118 GO:0005576
Pral4686g00024 246 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Pral4686g00024 246 SUPERFAMILY Barwin-like endoglucanases 15 146 IPR036908 -
Pral4686g00024 246 SUPERFAMILY PHL pollen allergen 148 242 IPR036749 -
Pral4686g00024 246 Pfam Expansin C-terminal domain 149 231 IPR007117 -
Pral4686g00024 246 Gene3D - 144 246 IPR036749 -
Pral4686g00024 246 PRINTS Major pollen allergen Lol pI signature 218 235 IPR005795 GO:0005576|GO:0019953
Pral4686g00024 246 PRINTS Major pollen allergen Lol pI signature 152 167 IPR005795 GO:0005576|GO:0019953
Pral4686g00024 246 PRINTS Major pollen allergen Lol pI signature 119 134 IPR005795 GO:0005576|GO:0019953
Pral4686g00024 246 PRINTS Major pollen allergen Lol pI signature 81 91 IPR005795 GO:0005576|GO:0019953
Pral4686g00024 246 PRINTS Major pollen allergen Lol pI signature 168 183 IPR005795 GO:0005576|GO:0019953
Pral4686g00024 246 CDD DPBB_EXLB_N 31 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4686g00024 Pral-Chr4686 129215 130765 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4686g00024 1 246 Expansin Gene Family AT4G17030 51.190 1.73e-82 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4686g00024 - - gmx:100779487 312.768