Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4686g00023 ATGGGTCTTCATTCTAAATACCAAGTGGCCCTCGTTTGTGTGATGATGCTCTTACCTGCTGCACTATGCTACTCCCAAGGCTTCACTCCCTCCAGAGCTACCTATTATGGTACCCCTGATGGCTATGGAACCCCGAGTGGAGCTTGTGGATATGGCTACTATGGCAGAACTGTAAACTATGGGAAGGTTGCAGCTGTGGCCGGGCTCTGGAGGGATGGCGCTGGATGCGGTGCTTGCTACCAAGTAAGGTGTAAGAACTCAAGATTATGCAACAGCTACGGCACGATGGTAGTGGCCACAGACTACGGTGCAGGAGACAGAACAGACTTTATTATGAGTCCAAATGGTTTCAAAGATCTGGGACGAAGCGCAAGTGCTTCAGAAGAGCTCAAGAAATACGGCGTCGTCGACATCGAATACAGGAGGGTGCCCTGCACATATGCTGGGTACAACGTTCGTGTCAAGATCCACGAGTCCAGCAGATACCCCGACTACCTTGCTTTCGTCATTCTCTACGTGCCTGGAATGAACGACGTCACTGCCCTTGAGATATATGACAATGATCGCCATGAATGGAAGCCAATGAGAAGAGTGTACGGGGCAGTGTTTGATATAGTTGGTGCACCCAGCGGACCATTGATGCTGAGGCTGCAATTCAGTGGAAGAACAGGTTGGGTTCAGTCCTCCAAGAGTGCCATTCCCGGAGACTGGAAGATCGGAGCTTCTTATGATTCTCAAGTTCATGTCTAA 750 0.5013 MGLHSKYQVALVCVMMLLPAALCYSQGFTPSRATYYGTPDGYGTPSGACGYGYYGRTVNYGKVAAVAGLWRDGAGCGACYQVRCKNSRLCNSYGTMVVATDYGAGDRTDFIMSPNGFKDLGRSASASEELKKYGVVDIEYRRVPCTYAGYNVRVKIHESSRYPDYLAFVILYVPGMNDVTALEIYDNDRHEWKPMRRVYGAVFDIVGAPSGPLMLRLQFSGRTGWVQSSKSAIPGDWKIGASYDSQVHV 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4686g00023 249 SUPERFAMILY PHL pollen allergen 151 245 IPR036749 -
Pral4686g00023 249 Pfam Expansin C-terminal domain 152 234 IPR007117 -
Pral4686g00023 249 CDD DPBB_EXLB_N 31 145 - -
Pral4686g00023 249 SMART dpbb_1 62 140 IPR007112 -
Pral4686g00023 249 SUPERFAMILY Barwin-like endoglucanases 13 149 IPR036908 -
Pral4686g00023 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 150 IPR007112 -
Pral4686g00023 249 Pfam Lytic transglycolase 64 140 IPR009009 -
Pral4686g00023 249 Gene3D - 17 145 IPR036908 -
Pral4686g00023 249 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Pral4686g00023 249 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576
Pral4686g00023 249 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Pral4686g00023 249 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Pral4686g00023 249 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Pral4686g00023 249 Gene3D - 146 246 IPR036749 -
Pral4686g00023 249 PANTHER EXPANSIN-B3 15 248 - -
Pral4686g00023 249 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 245 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4686g00023 Pral-Chr4686 124620 126089 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4686g00023 4 247 Expansin Gene Family AT4G17030 49.393 6.98e-81 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4686g00023 - - gmx:100779487 319.701