Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4686g00022 ATGGTAGTGGCAACAGACTACGGCGCAGGAGACAGAACAGATTTCATTATGAGTCCAAATGGTTTCTCAAAACTGGGACGAAACCCAAGCGCATCGGCGGAGCTCAATAAATACGGCGTCGTAGACATCGAATACAGGAGGGTTCCCTGCACATATGCAGGTTCCAAAGTACGTATCAAGATCCACGAGGCCAGCAATTACCCATACTACCTTGCTATTGTCATTCTTTATGTGCCCGGAATGGACGACGTCACCGCCGTTGAGATTTATGACAATGATGGGCATGAATGGAAGCCGATGAGAAGAGTGTACGGGACAGTGTTTGATATAGTTGGCGCACCAAGTGGACCAATGAACCTGAGGCTGCAACTCGGTGGTAAAACAGGTTGGGTTCAGTCGTTCAAGAGCGCTATTCCTGCTGACTGGAAGATTGGAGTTTCTTACGACTCTCAAGTAGTTCATGTCTAA 468 0.4786 MVVATDYGAGDRTDFIMSPNGFSKLGRNPSASAELNKYGVVDIEYRRVPCTYAGSKVRIKIHEASNYPYYLAIVILYVPGMDDVTAVEIYDNDGHEWKPMRRVYGTVFDIVGAPSGPMNLRLQLGGKTGWVQSFKSAIPADWKIGVSYDSQVVHV 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4686g00022 155 Gene3D - 1 50 IPR036908 -
Pral4686g00022 155 PRINTS Expansin/Lol pI family signature 97 111 IPR007118 GO:0005576
Pral4686g00022 155 PRINTS Expansin/Lol pI family signature 38 54 IPR007118 GO:0005576
Pral4686g00022 155 PRINTS Expansin/Lol pI family signature 136 150 IPR007118 GO:0005576
Pral4686g00022 155 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 69 150 IPR007117 -
Pral4686g00022 155 Gene3D - 51 151 IPR036749 -
Pral4686g00022 155 Pfam Expansin C-terminal domain 57 139 IPR007117 -
Pral4686g00022 155 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 1 55 IPR007112 -
Pral4686g00022 155 SUPERFAMILY Barwin-like endoglucanases 2 54 IPR036908 -
Pral4686g00022 155 SUPERFAMILY PHL pollen allergen 56 150 IPR036749 -
Pral4686g00022 155 PANTHER EXPANSIN-B3 2 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4686g00022 Pral-Chr4686 119696 138486 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4686g00022 2 153 Expansin Gene Family AT4G17030 48.701 2.60e-48 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4686g00022 - - aip:107617746 190.66