Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4686g00021 ATGGAACTTCATCCTAAATACCAAGTTGTCCTTGCCTGTGTTCTGCTGTTGCCTGCACTATGCTTCTCCCAAGGCTACACATACTCCAGAGCCACCTATTATAGCACCCCCGATGGCTATGGAACCCCAACTGGAGCTTGTGGATATGGCGATTACGGCCGGACTGTAAACTATGGGATGGTTGCTGCCGTGTCTGGCTTATGGAGAGACGGCGCCGGATGCGGTGCTTGCTACCAAGTGAGGTGCAAGAATCCAAGACTATGCGATAACGACGGCACGACGGTAGTGGCCACAGACTACGGTGCAGGGGACAGAACAGACTTCATTATGAGCCCAAATGCTTTCAAAGATCTGGGACGAAATCCGAGAGCATCAGAAGAGCTCAAGAAATACGGCGTCGTTGACATCGAATACAGGAGGGTACCCTGCAGATTTGCTGGCTATAACGTGCGTATCAAGATCCACGAATCAAGCAAATACCCATATTACCTTGCTATTGTGATTCAATACGTGCCTGGAATGAGCGACGTCACTGCCGTTGAGATATATCAGAATGATCGCCATGAATGGAGGCCAATGAGAAGAGCGTACGGGGCAGTGTTTGATATAGTTGGCGCACCACGTGGACCATTGATGCTGAGGCTGCGATTCAGTGGAAGAACAGGCTGGGCGCAGTCGACCAAGAGTGCAATTCCTGGTGATTGGAAGGTTGGAGCTTCCTATGATTCTCAAGTTCAAGTCTAA 744 0.5013 MELHPKYQVVLACVLLLPALCFSQGYTYSRATYYSTPDGYGTPTGACGYGDYGRTVNYGMVAAVSGLWRDGAGCGACYQVRCKNPRLCDNDGTTVVATDYGAGDRTDFIMSPNAFKDLGRNPRASEELKKYGVVDIEYRRVPCRFAGYNVRIKIHESSKYPYYLAIVIQYVPGMSDVTAVEIYQNDRHEWRPMRRAYGAVFDIVGAPRGPLMLRLRFSGRTGWAQSTKSAIPGDWKVGASYDSQVQV 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4686g00021 247 Gene3D - 19 144 IPR036908 -
Pral4686g00021 247 PANTHER EXPANSIN-B3 15 246 - -
Pral4686g00021 247 CDD DPBB_EXLB_N 29 143 - -
Pral4686g00021 247 SUPERFAMILY Barwin-like endoglucanases 12 147 IPR036908 -
Pral4686g00021 247 Gene3D - 145 247 IPR036749 -
Pral4686g00021 247 SUPERFAMILY PHL pollen allergen 149 243 IPR036749 -
Pral4686g00021 247 Pfam Lytic transglycolase 65 138 IPR009009 -
Pral4686g00021 247 Pfam Expansin C-terminal domain 150 232 IPR007117 -
Pral4686g00021 247 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 148 IPR007112 -
Pral4686g00021 247 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Pral4686g00021 247 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Pral4686g00021 247 PRINTS Expansin/Lol pI family signature 131 147 IPR007118 GO:0005576
Pral4686g00021 247 PRINTS Expansin/Lol pI family signature 190 204 IPR007118 GO:0005576
Pral4686g00021 247 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576
Pral4686g00021 247 PRINTS Major pollen allergen Lol pI signature 169 184 IPR005795 GO:0005576|GO:0019953
Pral4686g00021 247 PRINTS Major pollen allergen Lol pI signature 82 92 IPR005795 GO:0005576|GO:0019953
Pral4686g00021 247 PRINTS Major pollen allergen Lol pI signature 219 236 IPR005795 GO:0005576|GO:0019953
Pral4686g00021 247 PRINTS Major pollen allergen Lol pI signature 153 168 IPR005795 GO:0005576|GO:0019953
Pral4686g00021 247 PRINTS Major pollen allergen Lol pI signature 120 135 IPR005795 GO:0005576|GO:0019953
Pral4686g00021 247 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 243 IPR007117 -
Pral4686g00021 247 SMART dpbb_1 61 138 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4686g00021 Pral-Chr4686 108598 130765 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4686g00021 4 245 Expansin Gene Family AT4G17030 51.429 1.82e-85 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4686g00021 - - gmx:100779487 322.013