Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4686g00020 ATGGAACTTCATTCTAAATACCAAGTAGGCCTTGTCTGTGTGATGTTGCTCTTACCTGCACTATGTACCTCCCAAGACTTTACGTCCTCCAGAGCTACCTATTATGGCAGCCCCGATTGCTATGGAACCCCAAGAGGAGCTTGTGGATACGGCGAATACGGAAGAACAGTGAACGATGGGAGCGTTGCAGGCGTGTCTGGGCTTTGGAGGAACGGCTCTGGATGTGGTGGTTGCTACCAAGTAAGGTGTAAGAACCCACAATTATGCGACGACTACGGGACATACGTGGTGGTGACAGACTACGGGGAAGGGGACAGAACAGACTTCGTAATGAATCCACGTGCGTACGCTAGAATGGGACGCAATCCAGACGCATCAGAGGAGCTCTTCAAATACGGCGTCGTGGAGGTGGAATACAGAAGGATCCCCTGTAGGTATGGCGGCTACAACATCGTGCTCAAGGTGCACGAGCACAGCAAATACCCCAACTACTTCGCTGTTCTCATCCTCTACGTCGCCGGCCAAAACGACATCACCGCGGTTCAGGTGTGGCAGGAGGACTGCAAAGAATGGAGGCCCATGAGGAGAGCGTACGGAGCGGTATTTGATGCGGAGAACCCGCCACGTGGAGACCTGATGTTGAGGTTCCAGGTGAGAGGGCGTGCGGGTCTGTACTGGGTTCAGGCCAGAAATGCTATTCCTAGTAATTGGGAGGCCGGAGCCGCTTATGACTCTCAAGTTCAGCTAGATTAG 753 0.5312 MELHSKYQVGLVCVMLLLPALCTSQDFTSSRATYYGSPDCYGTPRGACGYGEYGRTVNDGSVAGVSGLWRNGSGCGGCYQVRCKNPQLCDDYGTYVVVTDYGEGDRTDFVMNPRAYARMGRNPDASEELFKYGVVEVEYRRIPCRYGGYNIVLKVHEHSKYPNYFAVLILYVAGQNDITAVQVWQEDCKEWRPMRRAYGAVFDAENPPRGDLMLRFQVRGRAGLYWVQARNAIPSNWEAGAAYDSQVQLD 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4686g00020 250 Gene3D - 19 145 IPR036908 -
Pral4686g00020 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 163 245 IPR007117 -
Pral4686g00020 250 PANTHER EXPANSIN-B3 16 248 - -
Pral4686g00020 250 CDD DPBB_EXLB_N 28 144 - -
Pral4686g00020 250 SUPERFAMILY Barwin-like endoglucanases 13 148 IPR036908 -
Pral4686g00020 250 PRINTS Major pollen allergen Lol pI signature 221 238 IPR005795 GO:0005576|GO:0019953
Pral4686g00020 250 PRINTS Major pollen allergen Lol pI signature 63 74 IPR005795 GO:0005576|GO:0019953
Pral4686g00020 250 PRINTS Major pollen allergen Lol pI signature 83 93 IPR005795 GO:0005576|GO:0019953
Pral4686g00020 250 PRINTS Major pollen allergen Lol pI signature 154 169 IPR005795 GO:0005576|GO:0019953
Pral4686g00020 250 PRINTS Major pollen allergen Lol pI signature 170 185 IPR005795 GO:0005576|GO:0019953
Pral4686g00020 250 Pfam Lytic transglycolase 62 139 IPR009009 -
Pral4686g00020 250 SUPERFAMILY PHL pollen allergen 150 245 IPR036749 -
Pral4686g00020 250 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Pral4686g00020 250 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Pral4686g00020 250 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Pral4686g00020 250 PRINTS Expansin/Lol pI family signature 191 205 IPR007118 GO:0005576
Pral4686g00020 250 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576
Pral4686g00020 250 Gene3D - 146 249 IPR036749 -
Pral4686g00020 250 Pfam Expansin C-terminal domain 152 234 IPR007117 -
Pral4686g00020 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 149 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4686g00020 Pral-Chr4686 106089 107721 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4686g00020 11 249 Expansin Gene Family AT4G17030 62.917 2.27e-113 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4686g00020 - - ccaj:109800044 420.624