Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4686g00019 ATGGAACTTCATCCTAAATACCAAATCGTCCTTGTCTGTGTTCTGCTCTTGCCTGCACTATGCTTCTCCCAAGGCTACACATACTCCAGAGCCACCTATTATAGTACCCCCGATGGCTATGGAACCTCAACTGGAGCTTGTGGATATGGCGATTACGGCCGAACTGTAAACTATGGGATGGTTGCCGGCGTGTCTGGCTTATGGAGAGGCGGCGCCGGATGCGGTGCTTGCTACCAAGTGAGGTGCAAGGATTCGAAATTATGCGATTACAGCGGCCCAATGATAGTGACGACGGACTTCGGCGCCGGAGACAGAACAGACTTCATTATGAGTCTTAATGGCTTCTTAAAACTGGGACGCGACGGAAAAGCATCGCAAGAGCTCAAGAACCAGGGCGTCGTCGACGTCGAATACAAAAGGGTGCCATGCACATTCGATGGCTCCAACGTCAAGATCAAAATCCACGAGTCCAGCAAATATCCAAACTACCTCGCCATCGCCATTATCTACGTTCCTGGAATGAACGACGTCGTCGCCGTCGAGATATCCGATAATGATGGCAAGGATTGGAAGGCGATGAGGAGAACATTTGGGGCAGTGTTTGATCTCCAGAACACGCCAAAAGGACCATTCAAGCTGAGGGTGAAATTCAGTGGGAGCTACGACTGGGTAGAGTCACCCAAGAATGTTATTCCTAGTTACTGGAAGAATGGAGCTATTTATGACACTGGAATCCATGCCTAA 744 0.496 MELHPKYQIVLVCVLLLPALCFSQGYTYSRATYYSTPDGYGTSTGACGYGDYGRTVNYGMVAGVSGLWRGGAGCGACYQVRCKDSKLCDYSGPMIVTTDFGAGDRTDFIMSLNGFLKLGRDGKASQELKNQGVVDVEYKRVPCTFDGSNVKIKIHESSKYPNYLAIAIIYVPGMNDVVAVEISDNDGKDWKAMRRTFGAVFDLQNTPKGPFKLRVKFSGSYDWVESPKNVIPSYWKNGAIYDTGIHA 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4686g00019 247 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 243 IPR007117 -
Pral4686g00019 247 SUPERFAMILY Barwin-like endoglucanases 11 147 IPR036908 -
Pral4686g00019 247 PRINTS Expansin/Lol pI family signature 190 204 IPR007118 GO:0005576
Pral4686g00019 247 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Pral4686g00019 247 PRINTS Expansin/Lol pI family signature 131 147 IPR007118 GO:0005576
Pral4686g00019 247 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576
Pral4686g00019 247 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Pral4686g00019 247 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 148 IPR007112 -
Pral4686g00019 247 Pfam Expansin C-terminal domain 150 232 IPR007117 -
Pral4686g00019 247 Gene3D - 145 247 IPR036749 -
Pral4686g00019 247 Pfam Lytic transglycolase 61 138 IPR009009 -
Pral4686g00019 247 SUPERFAMILY PHL pollen allergen 149 242 IPR036749 -
Pral4686g00019 247 Gene3D - 19 144 IPR036908 -
Pral4686g00019 247 PANTHER EXPANSIN-B3 15 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4686g00019 Pral-Chr4686 101248 102752 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4686g00019 4 245 Expansin Gene Family AT4G17030 48.980 4.21e-78 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4686g00019 - - gmx:100802855 285.034