Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4685g00005 ATGTATAGCGGCACGGGTGTGGCAGGAAGAACTCGGTCTAGACAAGGAAACGCTGGAAAACCATACTTTGAGGATGATAATAACCACAGGAAACAGCATGAGGCTGAGGAAATTACGTCTCGAGACGACTGGTGCTCTATCGATACTGTATCCGACGACGACGAGGACGTGATTTTGATCGAAAGCGCTATACAAGATGATGACAATAAGGAGGACATAGGACGAACTCAGCCCAGACAAGCACGTGAGGATTGTGATGAAACTGCAAGCGATATTGGCTCTTCTGATGTTGGTGGTAGTGACCATAATGGCTTTACTAGAAGCCGATGTATTGCCAGAAGAACTCGGTCTCATTTCCGTGCTTCTAAATTTAGAAACACTAAATCGGGGACCTTCAGCAATCCCATTAACATCGACGATGAGGAAAAGGAGAATGAAACAACAAATGACATCCCCATCCGTCAGGAGTCTCTCCATGGTGAGGAAGTGATGCCTCTTGAGAACTCCGCTTCCTCAAGTGATGAGGAAGTAAATCCAAAAGTGATGAGGAAGCGAAATCCAAAAGTTACGCCTAACCGGAGAAGAAAACAGTTTGATGGTTTCAAGATTCTTCCGGATCATCCCCACAGTAAGGGAGTGGCGCCTCTTGAAAAACCCGCTTCCTCAAGTGACGAGGAAGGAATTTCAGAAGTCATGAGGATGCGAAGTCCAGGAGTTACTAATAACGAGAGAAGAAAACAGTTTGATGGTTTCGAGATTCTTCCGGATCATCCCCTTAGTGAGGGAGTGGTGCCTCTTGAAAACCCCGCTTCCTCAAGCGATGAGGAAGGAAATCCAGAAGTTATGAGGAAGCGAAGTCCAGAGGTTACCCCTAATCGGAGAAGAAAACAGTTTGATGGTTTCGAGATTCTTCCGAATCATCCCCATAGCGAGGGAGTGGCGCCTCTTGAGAACCCCGCTTCCTCCAGTGATGAGGAAGGAAATCCAGAAGTTATGAGGAAGCGAAGTCCTGAAGTTACCCCTAACCAGAGAAGAAAACAGCTTGATGGTTTCGAGATTCTTCCGGATCATCCCCATAGCGAGGGAGTGGCGCCTCTTGAAAACCCCGCTTCCTTAAGTGATGAGGAAGGAAATCCAGAAGTTATGAGGAAGCGACTTAAAGTGTCCCGGCCAGTGTCTGATGATGAATTAGCTAAACTATGGGCTGAGTCGGACAAGGGTCTCTATGATTGTGAGGATAACGACGGAACTCCAGAAGATAGTAAACTAGAGAAATCAGAGCCCGAGGAAGAAGATAGTGAACTGCGTGTTCCTAGTGCTTGTGATGATGAGGCAGGAATTCCAGAAGAGATCAAGCCATGTCCATCATCAAAGTCTACTTCCGGGACTGAGGCGTCGCAGCCTCTTGAGAAATTAGAGGCGGAGGAAAAATCTTTTCTATGGGCTGAGATGGAGGATGGTCTAGCTTGTGAAGAAGTTACTCCTGATCAGGTTGACAATGAGCATTGTGATGACTCACGTGCGGAAGGTGAAGATAGTGTAGCTGCTCGTTGTCAGCGAGGGGATCATGTTCCTATAATGAACGATGAGATTGGGATAGTGTGTAAATATTGCTCACATCTGATTCGGGACATCAAAGATTGTGACCCTGAGTTTGGCAAAAATCCATCGGGAAAATCAGGTGGGAGATACTCTTATCGTTCGGAGGATTCTAACGACTCTTTCTCTGTTGATACTGAGCATGAAAATTCTGTTTGTGATGGTAAATGTTCCGGATTTGTTACTTATGCTCCTCCCACCGGAACTGTGTGGGATATAATTCCAAGAGCGAAGTGGAGGATGTACGATCATCAGGTGGAAGCTTTTGAATTTCTTTGGACGAACTTAGCTGGTGGGACAGTTCTGGACGAGTTGGAAGATCAGTTAGATTTTGCCAGTGGAAATGGCTGCATTATATCACATGCTCCTGGCACTGGCAAAACTTTTCTTACCATTGTCTTTCTCAGGGCTTTCATGAGGAGGTATCCAAATTGCAGACCCATGATCATAGCTCCAACCAATATTCTCCACACATGGGAGAAAGAGTTGAAGAAGTGGGAACTAGGTGATCCCGTTCCCTTTCATAACTTGAACAGGCCTGATCTTTCCGGGGAGGAGACTAAAACTGCCATGACCCGTCTTCGGAGGTACGGTGGTCGTGCACGTGCACACAATAATCAAAATGCTATCCGAGGGACAAAGATTTTTTCCTGGAAAGAGTCTTCAAGCATATTAGGAATTAGCTATACATTGTTTGATAGGCTTGCTAGAAAGGGCTCCGATACTGTAAAGAATGCCCTTTTTGAACTTCCAGGGTTACTAGTGCTTGATGAAGGTCACACCCCTCGGAATGAAAGGAGTCTCATGTGGGAAGCATTGTCAAAAGTAAAGACAAAGAGACGGATCTTACTCTCTGGTACTCCCTTTCAGAATAACTTTAAGGAGCTTAATAATACACTCCGGTTGGCCAAGCCAAGGTTGGCAGAAACCAAAAGGAATTTGGAATATCTGCTAAAATCATATGACAGAGTGGAGAGTAACAGTGAAAGAAGGGAGATAGTTGCTAATATCAGAGACTTGATCAAACCATTCGTGCATGTGCACAAGGGTACCGTCCTACAAGAGCGTCTTCCTGGGTTGATGGAATCTGTGGTTAATTTAATGCCATCTCAGACACAGATGTCAACTTTTGAGAACATTCGGCGGTTAAGGGAGGGCAGGGAGGGGTCCTCTAACTGGTTCAAATTTGAATATCTGATGTCTGTAGCTTCTGTGCATCCTTCACTTTTTGTCAATGAGCTTACCAACTTGCCAGAAAGAGAAAGGGTTGAATTGAATTCGGGGTTAGAAGGACTAGAATCGTCGCCAGAGTGTGGAGCCAAAACAAGGTTTGTAATGGACTTCGTCCAGCAAATTGTGCGCATGAAGGAAAAAGTTCTGATTTTTAGTCAATATATTGTTCCATTGACCTTTCTGGCAAACCACATCAAATCGTGCTTTGATTGGAATGAAGGAGAGCAGATGATGGTAGTTCACGGGAAGACCCATGAAGGGACGCGACAGGCTTCAATTGATGCATTCAATGATCCAAGCAGCAAAGCAAGGGTAATGCTGGCATCAACCAAGGCTTGTTATGAAGGGATCAATCTGGTTGGAGCTTCAAGGGTTATTTTACTGGACACCTTATGGAACCCTTCAGCAGAAAGGCAGGCTGTGTCTCGTGCTTATCGGATTGGACAGAAGAAAGTTGTGTACACTTACCGTCTCATAACCGCAGGGACATGGGATGAACAGAAACTTTATATTCAAGCTCAGAAGGATCAATTGTCTGAGTCGGTGTTTTTTGTTTCCGACGAAGATGACCGTTGCCAAAATATGTCGCCCGGTGGTTTTGAAGATAAACTTTTGGAAAAGATGGGACGTAAATTTGGAATAAAAATCACTAAAAGGGGAGTTACAATTTTGCTTGAAAGTGAAAAGTAA 3522 0.4495 MYSGTGVAGRTRSRQGNAGKPYFEDDNNHRKQHEAEEITSRDDWCSIDTVSDDDEDVILIESAIQDDDNKEDIGRTQPRQAREDCDETASDIGSSDVGGSDHNGFTRSRCIARRTRSHFRASKFRNTKSGTFSNPINIDDEEKENETTNDIPIRQESLHGEEVMPLENSASSSDEEVNPKVMRKRNPKVTPNRRRKQFDGFKILPDHPHSKGVAPLEKPASSSDEEGISEVMRMRSPGVTNNERRKQFDGFEILPDHPLSEGVVPLENPASSSDEEGNPEVMRKRSPEVTPNRRRKQFDGFEILPNHPHSEGVAPLENPASSSDEEGNPEVMRKRSPEVTPNQRRKQLDGFEILPDHPHSEGVAPLENPASLSDEEGNPEVMRKRLKVSRPVSDDELAKLWAESDKGLYDCEDNDGTPEDSKLEKSEPEEEDSELRVPSACDDEAGIPEEIKPCPSSKSTSGTEASQPLEKLEAEEKSFLWAEMEDGLACEEVTPDQVDNEHCDDSRAEGEDSVAARCQRGDHVPIMNDEIGIVCKYCSHLIRDIKDCDPEFGKNPSGKSGGRYSYRSEDSNDSFSVDTEHENSVCDGKCSGFVTYAPPTGTVWDIIPRAKWRMYDHQVEAFEFLWTNLAGGTVLDELEDQLDFASGNGCIISHAPGTGKTFLTIVFLRAFMRRYPNCRPMIIAPTNILHTWEKELKKWELGDPVPFHNLNRPDLSGEETKTAMTRLRRYGGRARAHNNQNAIRGTKIFSWKESSSILGISYTLFDRLARKGSDTVKNALFELPGLLVLDEGHTPRNERSLMWEALSKVKTKRRILLSGTPFQNNFKELNNTLRLAKPRLAETKRNLEYLLKSYDRVESNSERREIVANIRDLIKPFVHVHKGTVLQERLPGLMESVVNLMPSQTQMSTFENIRRLREGREGSSNWFKFEYLMSVASVHPSLFVNELTNLPERERVELNSGLEGLESSPECGAKTRFVMDFVQQIVRMKEKVLIFSQYIVPLTFLANHIKSCFDWNEGEQMMVVHGKTHEGTRQASIDAFNDPSSKARVMLASTKACYEGINLVGASRVILLDTLWNPSAERQAVSRAYRIGQKKVVYTYRLITAGTWDEQKLYIQAQKDQLSESVFFVSDEDDRCQNMSPGGFEDKLLEKMGRKFGIKITKRGVTILLESEK 1173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4685g00005 1173 Pfam SNF2-related domain 645 918 IPR000330 GO:0005524|GO:0140658
Pral4685g00005 1173 MobiDBLite consensus disorder prediction 1 42 - -
Pral4685g00005 1173 CDD SF2_C_SNF 973 1103 - -
Pral4685g00005 1173 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 641 839 IPR014001 -
Pral4685g00005 1173 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 31 1159 IPR044567 GO:0080188
Pral4685g00005 1173 MobiDBLite consensus disorder prediction 552 578 - -
Pral4685g00005 1173 Gene3D - 600 878 IPR038718 -
Pral4685g00005 1173 Coils Coil 840 860 - -
Pral4685g00005 1173 SMART ultradead3 610 850 IPR014001 -
Pral4685g00005 1173 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 598 847 IPR027417 -
Pral4685g00005 1173 Pfam Helicase conserved C-terminal domain 984 1092 IPR001650 -
Pral4685g00005 1173 MobiDBLite consensus disorder prediction 63 89 - -
Pral4685g00005 1173 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 980 1140 IPR001650 -
Pral4685g00005 1173 MobiDBLite consensus disorder prediction 192 206 - -
Pral4685g00005 1173 MobiDBLite consensus disorder prediction 23 42 - -
Pral4685g00005 1173 MobiDBLite consensus disorder prediction 327 342 - -
Pral4685g00005 1173 MobiDBLite consensus disorder prediction 121 470 - -
Pral4685g00005 1173 MobiDBLite consensus disorder prediction 137 161 - -
Pral4685g00005 1173 MobiDBLite consensus disorder prediction 62 109 - -
Pral4685g00005 1173 Gene3D - 891 1157 IPR027417 -
Pral4685g00005 1173 MobiDBLite consensus disorder prediction 377 449 - -
Pral4685g00005 1173 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 785 1127 IPR027417 -
Pral4685g00005 1173 MobiDBLite consensus disorder prediction 277 302 - -
Pral4685g00005 1173 SMART helicmild6 1003 1092 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4685g00005 Pral-Chr4685 27557 31924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4685g00005 990 1127 RAD5 or RAD16-like Gene Family AT1G11100 35.507 4.22e-16 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral4685g00005 SNF2_N 4.5e-23 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4685g00005 K10875 - jre:108991587 609.372