Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4684g00013 ATGGGTTGCACTGGAAAGGAAAAACACATCCGAGCAAATCGAAAATCTCAATCGGTCGGGCCAGATAACTGCTGTCGTCACGGAATTTCAATTTCCAAATCTATCATAGAATCAGGCCTCAAGCCGCTGAAATACCATCTGGGTCTGGACGGTTCGACTCAAAGCCCTAATCCCGATTCGCACCCTAACATCAAACCTGCTCCTAATGGCGAGGAATGTGGCTGGGGTTACTGCACAGAAGAACACTTGGAAGAAATTCTATTGAAAAACTTGGAGTATTTATACCATGAAGCTGTATCAAAGCTTGTTACACTGGGGTATGACGAGGATACTGCTTTAAAAGCAGTATTGCGAAACGGGCATTGTTATCATGGTGGTACGGATTTGCTGACAAATATAATGCATAACTCATTGGCTTATTTAAATAGTAATAGTGCTAGTGATAATGCATGTAAATGCAATTTGGATGAGTCAGAGCCTGTCTTCTCAGACTTGAGGGAATTGCAGGAGTACTCTCTGGCGGTTATGGTATATCTCTTGCAGCATTTAAGGCCGCATTTGAGTAAAGGTGATGCCATGTGGTGTTTACTTATGAGTGATCTTCATGTAGGAAGGGCAAACAAAGTTGAAATCCCCGTGCCTCCTGAGCCAGGCGGTGGCAATCCTGCTTCTTCTACAGTTGAAGCTGTTGACAATTCAGTAGCTGTGGTGACCCCATCACTTTGTAGGCTTCATGGGAGTTGGGCATTTGCAAATAGCGGAGACTCAGATTTCCCTGCCAACGGATTATTTTCTTGTGTTGCAGACATGACTTTACAAAGAGATATTGAATTCCCAAGGCATTTTAATCTTTCTCCTTCTATGAAGTCATTGTTGAAAAGAAATGTGGCGGTGTTTGCTGCTGGTTTGAGGGCAAATTCAAAACAATTGCAAACAAAAGCAAAAGCACGTCCTGGCAGTAGTTCCTCATCTAACTTGGATTCTCTTCCTATTCTGGGGACCAAACCTCCAGTTGAGAAGTCAGGGAATTCTCAGAATCAAAATAACCAAGATGCTCTGAATTCAGTTCTTAGTAGATTCCGTGATCTAAATTTTGATGAGAATTTGGAGTCTCTGGCAGAAGATCACAAGGATGAGGTGACTTCCGCTATACTTCATCAGATTAGTGATCTCGAGAAACAGGTACAGGAACGAAAAGATTGGGCTTATCAGAAGGCAATGCAAGCTGCGAGAAAGCTAAGCAGTGATCTGACTGAGCTGAAAATGTTAAGGATGGAAAGAGAAGAGGCTCAGAGATTGAAGGAAGGGAAGCAGGCCCTTGAGGACACAACTATGAAAAGACTTTCAGAGATGGAAATTGCACTGAGAAAGGCTAGCGGTCAGGTGGACCGTGCCAATGCAGCAGTGAGGAGACTTGAAACTGAAAATGCAGAGCTCAAAGCAGAGATTGAGGCTTCTAAATTGAGTGCTTCAGAGTCAGCCTCAGCTTGCTTGCAAGTTGCAAAGAGAGAGAAAAAGTGCTTGAAGAGGCTTGTAGCTTGGGAAAAACAGAAAGCTAAGATACAAGAGGAGATTTCACATGAGAAGGATAAAATACTGGAGCTGCAAAAAATGTTGGGTCGGATCCAACAATGTCAGAGAGAAGCTGAGATCAAGCGGAGGGAGGAGTTGAGGGCTAAAGAGGAAGCCTTAACGCTGATCAAGGAGGAAAAGCGGTTGAAGGAAGAAGTAGAGGCTAATAATAAGGGGAAGCTCGAGGCTCTACGGTTAAAGATAGATATAGATTTCCAACGCCACAAGGATGATGTCCTCAGACTTGAACAGGAACTCTCACGTCTTAAAGCATCTGATCAGCCTGCTAAATTGTACCATCACCAATCAAACAGTTCACCTGTGGGTGAGTCCGAGGATGCAAAGCCCCAGGTAGAGACAATTGCTATGCTGCTTCAAGAATTAGATAAATTAGAGGAAATCTCCAAGAAAGGAGACAACTATGATAGGGAATGCATTATATGTAGGAAAGATGAAGTGTCTGTTGTATTCTTGCCGTGTGCACATCAAGTGATGTGTGGTAGGTGCAGTGATGAGTATGGGAGAAGTGGCAATGCCCTTTGTCCTTGTTGCAGGGTTTCAATCGAACAGATGGTCCGTGTATTTGGGCCAACTTCTTAG 2172 0.4369 MGCTGKEKHIRANRKSQSVGPDNCCRHGISISKSIIESGLKPLKYHLGLDGSTQSPNPDSHPNIKPAPNGEECGWGYCTEEHLEEILLKNLEYLYHEAVSKLVTLGYDEDTALKAVLRNGHCYHGGTDLLTNIMHNSLAYLNSNSASDNACKCNLDESEPVFSDLRELQEYSLAVMVYLLQHLRPHLSKGDAMWCLLMSDLHVGRANKVEIPVPPEPGGGNPASSTVEAVDNSVAVVTPSLCRLHGSWAFANSGDSDFPANGLFSCVADMTLQRDIEFPRHFNLSPSMKSLLKRNVAVFAAGLRANSKQLQTKAKARPGSSSSSNLDSLPILGTKPPVEKSGNSQNQNNQDALNSVLSRFRDLNFDENLESLAEDHKDEVTSAILHQISDLEKQVQERKDWAYQKAMQAARKLSSDLTELKMLRMEREEAQRLKEGKQALEDTTMKRLSEMEIALRKASGQVDRANAAVRRLETENAELKAEIEASKLSASESASACLQVAKREKKCLKRLVAWEKQKAKIQEEISHEKDKILELQKMLGRIQQCQREAEIKRREELRAKEEALTLIKEEKRLKEEVEANNKGKLEALRLKIDIDFQRHKDDVLRLEQELSRLKASDQPAKLYHHQSNSSPVGESEDAKPQVETIAMLLQELDKLEEISKKGDNYDRECIICRKDEVSVVFLPCAHQVMCGRCSDEYGRSGNALCPCCRVSIEQMVRVFGPTS 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4684g00013 723 MobiDBLite consensus disorder prediction 1 15 - -
Pral4684g00013 723 MobiDBLite consensus disorder prediction 1 20 - -
Pral4684g00013 723 Coils Coil 420 443 - -
Pral4684g00013 723 Coils Coil 596 616 - -
Pral4684g00013 723 Pfam Zinc finger, C3HC4 type (RING finger) 666 715 - -
Pral4684g00013 723 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 651 720 IPR013083 -
Pral4684g00013 723 SUPERFAMILY RING/U-box 650 715 - -
Pral4684g00013 723 MobiDBLite consensus disorder prediction 617 637 - -
Pral4684g00013 723 Coils Coil 448 489 - -
Pral4684g00013 723 PANTHER OS05G0141500 PROTEIN 1 718 IPR046934 -
Pral4684g00013 723 Pfam Family of unknown function (DUF6592) 90 206 IPR046527 -
Pral4684g00013 723 CDD RING-HC_MIP1-like 664 718 - -
Pral4684g00013 723 MobiDBLite consensus disorder prediction 47 66 - -
Pral4684g00013 723 MobiDBLite consensus disorder prediction 309 330 - -
Pral4684g00013 723 Coils Coil 511 587 - -
Pral4684g00013 723 ProSiteProfiles Zinc finger RING-type profile. 669 709 IPR001841 -
Pral4684g00013 723 MobiDBLite consensus disorder prediction 621 635 - -
Pral4684g00013 723 MobiDBLite consensus disorder prediction 309 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4684g00013 Pral-Chr4684 29744 33178 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4684g00013 669 719 C3H Transcription Factor Family AT1G73950 43.137 1.40e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4684g00013 - - gmx:100777787 933.324