Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4684g00009 ATGAAAAAGAGACCATACTTCTGTTTTCTTGGTCATTTACTGAACACTTATAAGCCATGTAAAAACCTGCATGGATATTCAGGTGCACAGAGTCAGCTTGTTTGTTCTGGGTGTAGAAACCTTCTAATGTATCCTGTTGGAGCCACCTCTGTTTGTTGTGCTGTTTGCAATGCAGTCACAGCTGTGCCTCCTCCTGGCACTGAAATGGCCCAGTTGGTTTGTGGAGGCTGCCACACTTTACTGATGTACATTCGTGGAGCCACCAGTGTTCAATGCTCTTGCTGTCACACTGTAAATCTAGCTTTAGAAGCAAATCAGGTGGCTCATGTCAACTGTGGGAACTGCAGGATGCTGCTGATGTACCAATATGGAGCAAGATCCGTGAAATGTGCTGTTTGCAATTTTGTGTCATCCGTTGGGGTCTCAGCAGGCACGACTGAACAGAAGTTTAATACCTAA 459 0.451 MKKRPYFCFLGHLLNTYKPCKNLHGYSGAQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVSSVGVSAGTTEQKFNT 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4684g00009 152 PANTHER PROTEIN LSD1 30 141 IPR040319 -
Pral4684g00009 152 NCBIfam zinc finger domain, LSD1 subclass 32 62 IPR005735 -
Pral4684g00009 152 NCBIfam zinc finger domain, LSD1 subclass 109 136 IPR005735 -
Pral4684g00009 152 NCBIfam zinc finger domain, LSD1 subclass 71 100 IPR005735 -
Pral4684g00009 152 Pfam LSD1 zinc finger 112 136 IPR005735 -
Pral4684g00009 152 Pfam LSD1 zinc finger 74 98 IPR005735 -
Pral4684g00009 152 Pfam LSD1 zinc finger 35 59 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4684g00009 Pral-Chr4684 22961 24349 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Pral4684g00009 zf-LSD1 9.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4684g00009 - - qsu:112000975 249.98