Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4684g00008 ATGAAAAAGAGACCATACTTCTGTTTTCTTGGTCATTTACTGAACACTTATAAGCCATGTAAAAACCTGCATGGATATTCAGGTGCACAGAGTCAGCTTGTTTGTTCTGGGTGTAGAAACCTTCTAATGTATCCTGTTGGAGCCACCTCTGTTTGTTGTGCTGTTTGCAATGCAGTCACAGCTGTGCCTCCTCCTGGTAAGCTCAAGCTTCTTCTCCCTTTTCAAGGTTCAATTTGCTGCCCATACCCCTCTCTTCTTTCGGTCAAGGGACTATTAATTAGACAGTCAAAGGAGAAGCATGTTTGTGTGTGGACAGGCACTGAAATGGCCCAGTTGGTTTGTGGAGGCTGCCACACTTTACTGATGTACATTCGTGGAGCCACCAGTGTTCAATGCTCTTGCTGTCACACTGTAAATCTAGCTTTAGAAGCAAATCAGGTGGCTCATGTCAACTGTGGGAACTGCAGGATGCTGCTGATGTACCAATATGGAGCAAGATCCGTGAAATGTGCTGTTTGCAATTTTGTGTCATCCGTTGGGGTCTCAGCAGGCACGACTGAACAGAAGTTTAATACCTAA 579 0.4491 MKKRPYFCFLGHLLNTYKPCKNLHGYSGAQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGKLKLLLPFQGSICCPYPSLLSVKGLLIRQSKEKHVCVWTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVSSVGVSAGTTEQKFNT 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4684g00008 192 SUPERFAMILY Multiheme cytochromes 13 155 IPR036280 -
Pral4684g00008 192 NCBIfam zinc finger domain, LSD1 subclass 149 176 IPR005735 -
Pral4684g00008 192 NCBIfam zinc finger domain, LSD1 subclass 111 140 IPR005735 -
Pral4684g00008 192 NCBIfam zinc finger domain, LSD1 subclass 32 62 IPR005735 -
Pral4684g00008 192 Pfam LSD1 zinc finger 35 59 IPR005735 -
Pral4684g00008 192 Pfam LSD1 zinc finger 114 138 IPR005735 -
Pral4684g00008 192 Pfam LSD1 zinc finger 152 176 IPR005735 -
Pral4684g00008 192 PANTHER PROTEIN LSD1 30 181 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4684g00008 Pral-Chr4684 22961 24506 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Pral4684g00008 zf-LSD1 1.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4684g00008 - - qsu:112000975 222.246