Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4684g00007 ATGCCAGTTCCGCTTGCCCCTTATCCGACGCCCCCCGCTCCATATAGTCCTCCGTCAAATGGTGCACAGAGTCAGCTTGTTTGTTCTGGGTGTAGAAACCTTCTAATGTATCCTGTTGGAGCCACCTCTGTTTGTTGTGCTGTTTGCAATGCAGTCACAGCTGTGCCTCCTCCTGGTAAGCTCAAGCTTCTTCTCCCTTTTCAAGGTTCAATTTGCTGCCCATACCCCTCTCTTCTTTCGGTCAAGGGACTATTAATTAGACAGTCAAAGGAGAAGCATGTTTGTGTGTGGACAGGCACTGAAATGGCCCAGTTGGTTTGTGGAGGCTGCCACACTTTACTGATGTACATTCGTGGAGCCACCAGTGTTCAATGCTCTTGCTGTCACACTGTAAATCTAGCTTTAGAAGCAAATCAGGTGGCTCATGTCAACTGTGGGAACTGCAGGATGCTGCTGATGTACCAATATGGAGCAAGATCCGTGAAATGTGCTGTTTGCAATTTTGTGTCATCCGTTGGGGTCTCAGCAGGCACGACTGAACAGAAGTTTAATACCTAA 558 0.4803 MPVPLAPYPTPPAPYSPPSNGAQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGKLKLLLPFQGSICCPYPSLLSVKGLLIRQSKEKHVCVWTGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVSSVGVSAGTTEQKFNT 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4684g00007 185 PANTHER PROTEIN LSD1 16 56 IPR040319 -
Pral4684g00007 185 Pfam LSD1 zinc finger 145 169 IPR005735 -
Pral4684g00007 185 Pfam LSD1 zinc finger 28 52 IPR005735 -
Pral4684g00007 185 Pfam LSD1 zinc finger 107 131 IPR005735 -
Pral4684g00007 185 NCBIfam zinc finger domain, LSD1 subclass 104 133 IPR005735 -
Pral4684g00007 185 NCBIfam zinc finger domain, LSD1 subclass 142 169 IPR005735 -
Pral4684g00007 185 NCBIfam zinc finger domain, LSD1 subclass 25 55 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4684g00007 Pral-Chr4684 22961 24942 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Pral4684g00007 zf-LSD1 1.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4684g00007 - - qsu:112000975 239.965