Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral467g00003 ATGACTTTACACAAGTTTTTGGGTAAGAAGGAAACCCCAAGGCCTCAACTTGAGGATCCCAAGATCGGCAAGAATGAGCAAGATTGCTTCGTAGGAGATGAAGGGGCAAGCTGCATTGAGGTCGACGCTGAGGCAGTCAAAACTTGGATATACCCAGTCAATATTCCTCTTCGTGACTACCAGTTTGCTATAACAAAGTCTGCTTTATTTTCAAACACGTTGGTGGCATTGCCAACAGGACTTGGGAAAACTCTGATTGCAGCAGTGGTCATGTACAACTACTTCCGATGGTTTCCTAGAGGGAAAATTGTCTTCACTGCTCCTTCTCGGCCACTTGTCATGCAACAGATAGAAGCATGCCATAACATTGTCGGAATACCTCAAGAATGGACAATTGATATGACGGGTCAACTAAGTCCGGCTAAAAGAGCATGCTTTTGGAAAACCAAACGAGTTTTCTTTGTCACTCCACAAGTGTTGGAAAAAGATATTCATTCCGGTAAATGTTTGGTGAAATACTTGGTATGTTTGGTAATTGATGAAGCCCACAGAGCAATGGGAAATTACTCTTATTGTGAAGTAGTTCGTGAGTTAATGGCTGTGCCAGTGCAACTGCGAATATTGGCTTTAACTGCAACACCGGGAGCAAAGCGGCAAACGGTCCAGCAAGTCATTGATAATCTGCATATCTCCAATCTTGAATATCGCAATGAAAATGATCCCGATGTTATCTCCTATGTTCACAAAAGGAAGATAGAGTTGATTCAGGTTGCAATGGGTCAAGATGCGGTGGAAATAAACCAGCAGCTTTTGGAAGTAATACGCCCAATTGTAGGTCGCCTCTCGACAATTGGAGTCCTCAAGAATAGAGATTACCGCACTTTGAGCCCTTGTGAATTACTTGAAATACGGGAAAAGTATCGTCAAGCACCTCCACAAGATCTTTCCAGTGTCAACAATGGGGATGTTGAGGGCTATTTTGGAGTTCTTATTAGTCTTTACTACATCCATAAGCTACTTTCAAGTCATGGAATCAGGCCAGCGCACGAGATGCTTGAAAGAAAATTGAAGCAAGGATTTTTTGCAAAATATGTGAGTAAAAACGAAGTTCTTTTGAAAGCAAGGATGTCAATGCAGCAAAACTTATCTCATGGAGCACCAAGTCCCAAGTTGTCCAAAATGCTTGAAATACTGCGGGAACATTTCAAAGCCAATGATCCTCAGAGCTCTAGGGTTATTATTTTCTCGAATTATAGGGAAAGTGTGAGGGATATAATGGATGCACTAGCAAATATTGGGGAACCAATCAGAGCTACTCAGTTTATTGGTCAAAGTTCAGGGAAAACAATGAAAGGTCAGTCCCAGAAAGTTCAACAGGCAGTGCTGCAGAAATTCCGTTCTGGAGCCTACAATGTCATTGTTGCTACATCAATTGGTGAAGAAGGTCTTGATATCATGGAAGTTGATCTTGTTGTAGCTTTTGATGCTAATGTATCACCACTAAGAATGATTCAGCGCATGGGGAGAACTGGAAGAAAGCACGATGGACAAGTTGTAGTTTTAGCTTGTGAAGGGACTGAACTGAAGGGATACTTGCGGAAACAAGCCAAGAGCAAGGCTATTAGTAAACACATGCGGAATGGGGGCATAAATAGCTTCACTTTTCATCCTAGTCCCAGGATGATTCCCCACGTCTTTAAACCAGAGGTTCAGTTTGTTGAGCTGTCAATTGAGAAATTTGTTTCCCGTGAGAAGAAAGTAAGAGGTGACTCCATTCAGATACATGCATCTATTGGCAAACTCACAGCAGCAGAGAATAATATACTTGCGAAGTATTTTCCAACCACTGGTGAAAATACGTGGAAGCCATCTCTTGTTGCCTTTCCTTACTTTCAGACATATCCTTCTAGAACACATAAAGTGAATCATTCCTGTAGAGCAATAATGCTCATTGATTTGATGCAACGTCTGCAAGGACAAACGTCATTCTTAGGAAACAGTAAAACTTCCATCCCTCAGGATGGCCCGTGTATAGAAGCTAGCAATGCATCCGACCTAAACAAGATTCGCGAAGTTAGATCAGACAACAAATCACACTCTAGGCATACCGTTGGAAGCAATGCAGTCTCTGTAAGTTGCCTGAAGCTGGATTCCTCTCGTTTAGGGATTCAGACTGAAGACTTTGTTGATCTAACTGCACCAGATAATATTGTGGGAGAACAGAGATCGCCTAATACAAGTTGCATAAAGAAGGATGATCTACCGTCATCTAGTTTTATTGACTTAGATGAAAATAAAGAGAAAACATGTGAGTTTGAAGAGACAGTTCCTGACACTCCAATTGCTAACACAGTTATGTCAGATGAAGGGCATAGCAATAGTGGAACGCCTGATCATTCTCAGTTCAAGACATCTTTGTTGCTAGACGACGTATTCAATAACGACATCAATGAGTCCCAGTGTAGTCCCCGTTTGACCAGTTTAATTAAAAGTGGTGTTGTTCCAGAGTCTCCCATTGATGAGAGGACTGATTTTCTTCCAGGGTTATCAAGAAGCCAGCTTATCATTCGGCACTGTAAACCACTTGTTCATCACCAGACGGAACAACAAATTACCTCAAGTCTAGGGACAAATGAAGAGGTCGTTATTGATAATGCCGCAGATGTAAATAACGTACCTATTGATCCTTCTAATAATGAAACTCAAACTCTTTTATTCGAACGGAAGAGTCGTGCAATTAGAAGAGTTCATGTCTTTAGTTCTCCTGTGGTGGAGGAAGCCCAAAATCTTTTAGCGGATATTACCAACCGGAGCTTTAGTGAAGATTCACCTTTATGTGGTGGAAATGTTGCTGATAGTGTCAAGCCAGCACATAGATTTAAAAGGTTGCGTAAAGCTGACGATGGTAGGCGTCATAGGAAAGAGAAAAGCAGAAAAGATCATGGCAAAGGTAGAAGGAAATCAATGCACAATGTCAGAGTCTTCATTGACGACGAGGCTGAGGTTTCTTCAGAAGCTGACGTTTCTAATGATGAGGATGGTGAGGATGACAGTTCATCGGATAGTTTCATAGATGACAGGATGAACCCTACAGCAACAACTCAGTCCAGAGCTAGCGGAATAGACATGATGGCAATATACAGGCGTTCTTTGCTCAGTCAAATACCAGTTGAAGGAGGGACCAACGTTTCTGCAACATTTAGTCCTGACTACGTGTCGTCTATGACTATAATTAGTGAAAATGAGGACTCTTCTGGCAGCATACCAAGACATATTCAGACTCGTCAAATTGAGCAAACAAATCAGTCAGCTTCCAAGAGTTTGCAGTCCGTTGAAGGCAACCAAATCACCTCAGAAGCTACACCTTCGAGTAGTTTTCCTGCTGAAAACACGACACAGATGAGAAGTCGAAAAAGAAAATTGTCATTTCATCGTTTTGGATTTCCAAGTGCAAATCTTGAGCAGCAATTTGCACTTCAATCAAACGAAGAACCTATGGATGCTTGTGCAGCTAAGGATATTCTCTGTGATGATCACATTTTTGATAATATTGACCTTGATGAGTTGGAGGCTCAAGCAGCTTCTCTTCTTAAACAAAACTCAGATTTTTCAGCTCAGAAGCAAGGTGCGCATACAATACCTCAATCTCACTTGCAAAATCCTCACCTTTCCAACCCATCATTCGACCTTGGGATATGA 3699 0.4171 MTLHKFLGKKETPRPQLEDPKIGKNEQDCFVGDEGASCIEVDAEAVKTWIYPVNIPLRDYQFAITKSALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPRGKIVFTAPSRPLVMQQIEACHNIVGIPQEWTIDMTGQLSPAKRACFWKTKRVFFVTPQVLEKDIHSGKCLVKYLVCLVIDEAHRAMGNYSYCEVVRELMAVPVQLRILALTATPGAKRQTVQQVIDNLHISNLEYRNENDPDVISYVHKRKIELIQVAMGQDAVEINQQLLEVIRPIVGRLSTIGVLKNRDYRTLSPCELLEIREKYRQAPPQDLSSVNNGDVEGYFGVLISLYYIHKLLSSHGIRPAHEMLERKLKQGFFAKYVSKNEVLLKARMSMQQNLSHGAPSPKLSKMLEILREHFKANDPQSSRVIIFSNYRESVRDIMDALANIGEPIRATQFIGQSSGKTMKGQSQKVQQAVLQKFRSGAYNVIVATSIGEEGLDIMEVDLVVAFDANVSPLRMIQRMGRTGRKHDGQVVVLACEGTELKGYLRKQAKSKAISKHMRNGGINSFTFHPSPRMIPHVFKPEVQFVELSIEKFVSREKKVRGDSIQIHASIGKLTAAENNILAKYFPTTGENTWKPSLVAFPYFQTYPSRTHKVNHSCRAIMLIDLMQRLQGQTSFLGNSKTSIPQDGPCIEASNASDLNKIREVRSDNKSHSRHTVGSNAVSVSCLKLDSSRLGIQTEDFVDLTAPDNIVGEQRSPNTSCIKKDDLPSSSFIDLDENKEKTCEFEETVPDTPIANTVMSDEGHSNSGTPDHSQFKTSLLLDDVFNNDINESQCSPRLTSLIKSGVVPESPIDERTDFLPGLSRSQLIIRHCKPLVHHQTEQQITSSLGTNEEVVIDNAADVNNVPIDPSNNETQTLLFERKSRAIRRVHVFSSPVVEEAQNLLADITNRSFSEDSPLCGGNVADSVKPAHRFKRLRKADDGRRHRKEKSRKDHGKGRRKSMHNVRVFIDDEAEVSSEADVSNDEDGEDDSSSDSFIDDRMNPTATTQSRASGIDMMAIYRRSLLSQIPVEGGTNVSATFSPDYVSSMTIISENEDSSGSIPRHIQTRQIEQTNQSASKSLQSVEGNQITSEATPSSSFPAENTTQMRSRKRKLSFHRFGFPSANLEQQFALQSNEEPMDACAAKDILCDDHIFDNIDLDELEAQAASLLKQNSDFSAQKQGAHTIPQSHLQNPHLSNPSFDLGI 1232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral467g00003 1232 MobiDBLite consensus disorder prediction 942 1037 - -
Pral467g00003 1232 MobiDBLite consensus disorder prediction 1097 1132 - -
Pral467g00003 1232 MobiDBLite consensus disorder prediction 964 989 - -
Pral467g00003 1232 Pfam Type III restriction enzyme, res subunit 69 214 IPR006935 GO:0003677|GO:0005524|GO:0016787
Pral467g00003 1232 MobiDBLite consensus disorder prediction 1206 1226 - -
Pral467g00003 1232 FunFam ATP-dependent RNA helicase, putative 377 548 - -
Pral467g00003 1232 MobiDBLite consensus disorder prediction 1 24 - -
Pral467g00003 1232 MobiDBLite consensus disorder prediction 1097 1133 - -
Pral467g00003 1232 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 390 558 IPR001650 -
Pral467g00003 1232 Gene3D - 52 247 IPR027417 -
Pral467g00003 1232 SMART helicmild6 423 514 IPR001650 -
Pral467g00003 1232 Pfam Helicase conserved C-terminal domain 395 513 IPR001650 -
Pral467g00003 1232 MobiDBLite consensus disorder prediction 1206 1232 - -
Pral467g00003 1232 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 527 IPR027417 -
Pral467g00003 1232 Gene3D hef helicase domain 261 381 - -
Pral467g00003 1232 CDD SF2_C_FANCM_Hef 388 522 - -
Pral467g00003 1232 Gene3D - 382 548 IPR027417 -
Pral467g00003 1232 Coils Coil 1186 1206 - -
Pral467g00003 1232 SMART ultradead3 53 253 IPR014001 -
Pral467g00003 1232 MobiDBLite consensus disorder prediction 1001 1020 - -
Pral467g00003 1232 FunFam Fanconi anemia, complementation group M 52 247 - -
Pral467g00003 1232 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 40 1209 - -
Pral467g00003 1232 CDD FANCM_ID 264 371 IPR039686 GO:0006281|GO:0043138
Pral467g00003 1232 CDD DEXDc_FANCM 55 236 IPR044749 GO:0005524
Pral467g00003 1232 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 64 232 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral467g00003 Pral-Chr467 20647 33525 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral467g00003 413 512 Eukaryotic Initiation Factors Gene Family AT3G13920 28.000 1.06e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral467g00003 K10896 - qsa:O6P43_030010 1348.95