Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4679g00050 ATGGCTTCATCCTTGGGGAAACTCCTAGCTGAAGAAGGGTTCAAGGGAAGCAGAAGAATCACAAGATCCAGATCTTCCGTCCAGTCTAATCCTGATAAGATGCCCCATCACTCAATCAGGGACCAGGAAAGGAGACTATCTGTATCAGATGACAGAATTAGAGAGGAGAGAACAAAATCTTACATCTCACAATATCGGATTGGGGATGAATTTTTTAATAGAGATACTGCTCAGCGCGGGAGACCAAGGGATAATCTTGCTGAAAGAGGGAAATTGGATGACGGATTGAAGAATGAAATTGCTGAGAAATCTTCCAGCAATGCGAAGTTGAGTAAAAAATTTGATAGCAAAACACCAGGACACACACCTAGAAATGAGATAACCAAGGTGGACGACCAAGAAGACGGCAAAGTTAAAGATGTTTATTCCAATGAATTAATTGCAAATAGAGGGAAAGAAGAGTATTTGAATGACTTTAGGAATAGGGATAAGTGGCCCAGGATGCTACTCAAGGATGCAAAGCTGGATAAGAGGCATAGCAGCAGTTCTAGTACACATAAGGTTGGACAGTTGAATGGAAGTGCCAAGAAGAATATAAAGCGACAGGAGAGATCATACGGTCGATCAACTAACGAAAGCTTTGAAAATAGTTATGACAAAAATCATGGGCATGCTTTGCAAACAACAGCTGATGTAGCTCTCGATGAAGTTGCTGTGCAAGCAGTTGTTTCTATTCTAAATGGATATATAAAACGCTTTCTAAACGATGAAGATTTTCGGACCACATGGCGTCACAATTGTTTTTCTTCCTTGAATTTCATTGAACTGGAAGATGAGAACAGTACTGAGACCAAAGTCATAAGAAGTCTTGAACAAGCAATTGATACAATAGAACAAGCTGCTGAGGAATCTGTATCTGAAAAAGAATTGAAAAGAACCTCTTTGCAGCTAAGCATTATTACAGGTCTAAGCTTAAATGAACTGAAGTATGGTTTTACATGTGGGATACCGAATTATAAGTTGTCAGCCTGTGCTCATCTTTACCTCAGTGTTGTCTATAAGATACAGAGAAAGGATAAGGTATCGGCAAAGCATCTTTTGCAAGTATTTTGTGATTCACCTTCTCAGGCACGGACAACATTGCTTCCTGAATTGTGGGAGTGCTTATTTTCTCCACAACTTTCTCTTTTGAAAGAATGGTACAACAGGGAAGTTCATATGCTAGTGAATATGACAAGCAGAACAAGAAAAATGAAGCATCTTGAAAAGGTGTATAATGAGCATTTGGATTCTGGGACTCATTCATTTGCTGTGTACTACAAAGACTGGCTCACTGAAGGGGGAGAAGCTCCATCAGTTCCTTCTATCACCGTTCCTTCAACATCTGCTTCAGAAAGTCATTACGGAAGTTCCCTTGGTCATTCTTCTGAATTAGCTTCTTCCGTTGATTCATTCTCACCACAGCCAATGGTTAGCAAAAAACTGTATGATTCTGTCTTTGGTAGCTCGAGTAAAGCTGGAATTGAAGAAGAGGAAGATAATGCCACGGAAGATAACTTACACAACAGCAAGGGACACTCATGTGTTTCATCTATTGCTGAACAAAAATTAACATTTGTCTCTGAAATGGTTGAATATACCGATGAAGACACTGAAGAAGATTCCCAGAAGAAAGGAACCTCAATGATAGATGAACAAATGTGGCAAGGAAGAAGTGTCAGTGATGATATTGCTAACTCTTTCACACATGTAAAAAGCAACATGCTAGATGATCTACCGTATGAGAGAACTAATGAAGTCCCTCTTACGAAGGTGACAGGATCTGTTTTAGTAATGCAAGATGCCAAAAGGCATTTTGATCACATTGTGTCTACTGGTTCACTGTCCAGTGAGGAATCAGTCTCCAACTCTGTTGCAAATCCAACAGAGACGAGCTCTTCTCCTAAAGGGTTATATTTTCCAACTATTCCGCAGGAGTTCATTTGTCCTTTGACTGGAACTTTATTTGAGGAACCGACTACCCTTGAAACTGGTCAAACCTTTGAACGAGCAGCAATCAAAGCCTGGTTTGAAAAGGGAAACAGAACTTGCCCGGTGTCTGGAAATAGTTTAGATTGTGTTGCCATGCCATTAACTAACCTTGTTTTGAAGCGTTTGATTGATAATTGGAAGTCAGAACAATTTAGTCGCATACTGGATTTTGCTTCTCAAATCGCGGACAAAGAAAGCCATAAGCTGAAACATGAAGAGGCTGCTGTCTTTAATTTGGAGAGTCTCATCACTTCATTGAATGGAGTAAACAAAAGAAATTATGTCAGACAACTCATCTCTGTAGGGTTTCTGTCATTTCTTTTTAGGAGGTTTGAATTGGGAAATGTGGAAGAGAAAACACATGTTTTGGCACTCTTGGTAAATTGCAGTGAAGCAGATTCTAGCTGCATATATCAGATCGCGAGGAACATTGACAAAAAATGTCTTCTACACCTGCTTTGCAGTGTGGATGTTGCCCCAGGAACAAGTGCAATTTCGCTACTTACTGAATTATTTTCTCTTAAAAGAAATGATGTTATTTCCTTCTTAAGTGGCTTTGCTGGTCCGGATTTATTGAACACTATGGATGTTCTACTTTTGTATCTTCAGAATTCTTCTCTCCGTCAAAAACCCCTTGTTGCTGTTCTTCTGTTGCACCTTGATTTACTGACTGAGCCTCCAATGCATTGCGCATACAGAGAGGAGGCTGTGAATGCCATTGCAGTTGCTCTTGATGCCAGCTTACATGATGACAAGGTTCAAGAAAAGTGTTGCAGGGCACTGCTTATTTTGAAAGGACTTTTTGCTTTCAAAAGAAAGAAACAAGCCAAGGCTAACATTTTAGAGCAAAATGAAGATGAAAATGATAGTTCAGCAGTCAATTCTTGTGAGCATGAAGAAGAGGGCATAATATCATTGGTATGTTTGCTTTCCAAAGAAGATGAAGAAGAAAAGAACCAAGAGTGGCTGATGAAGTTGTTAGAATTGTTGATTGGTGATGGAGAAAGCCCATTTTTGAAGAACATTTCAAGATGTTTAGCCTCTAGATACCTTGATTTGGTGAAGATATGCTTATTAACAGTCACATGGCTTAGTTCCAGACTTTCTGTACTAAGTAATTCTGGTTCACCCCTTCCTGCATTCCCAGCCATCATCTATCAGATGAAAGGAATACTGCAGAGTGGGGATCTTGAGTTCAAGACTCTTGCGTCTTTGTCCTTGTTTCATTTCAGTAAGATACCAGAAAGCAGAGCCCTTATGATGACTATGGCAGAAGATATTGCTACTCCTCTTCATAGAATTGTTGATGTAACATGGAGTGCAAAGCAGCTTCTTATCATGTTAGGGAAGGATTTGCTGAATTTGACAGGACCTGGCATAATCCATCTCCAACCCATCGTCTTCACCATCGCGAAGCCAGGTCCAAGTGTGGAGTTTCTTGATACAGAAGAACATCGGCATTTAGACTCTTTGGGAGATATTTCTGTGCTCAGGGCTGCCAGTGTGTTGAAAAATGGTGCTTTGGAGTTATATTGGGTGGGTGATATAGCTGTTGATTGTTAG 3594 0.4004 MASSLGKLLAEEGFKGSRRITRSRSSVQSNPDKMPHHSIRDQERRLSVSDDRIREERTKSYISQYRIGDEFFNRDTAQRGRPRDNLAERGKLDDGLKNEIAEKSSSNAKLSKKFDSKTPGHTPRNEITKVDDQEDGKVKDVYSNELIANRGKEEYLNDFRNRDKWPRMLLKDAKLDKRHSSSSSTHKVGQLNGSAKKNIKRQERSYGRSTNESFENSYDKNHGHALQTTADVALDEVAVQAVVSILNGYIKRFLNDEDFRTTWRHNCFSSLNFIELEDENSTETKVIRSLEQAIDTIEQAAEESVSEKELKRTSLQLSIITGLSLNELKYGFTCGIPNYKLSACAHLYLSVVYKIQRKDKVSAKHLLQVFCDSPSQARTTLLPELWECLFSPQLSLLKEWYNREVHMLVNMTSRTRKMKHLEKVYNEHLDSGTHSFAVYYKDWLTEGGEAPSVPSITVPSTSASESHYGSSLGHSSELASSVDSFSPQPMVSKKLYDSVFGSSSKAGIEEEEDNATEDNLHNSKGHSCVSSIAEQKLTFVSEMVEYTDEDTEEDSQKKGTSMIDEQMWQGRSVSDDIANSFTHVKSNMLDDLPYERTNEVPLTKVTGSVLVMQDAKRHFDHIVSTGSLSSEESVSNSVANPTETSSSPKGLYFPTIPQEFICPLTGTLFEEPTTLETGQTFERAAIKAWFEKGNRTCPVSGNSLDCVAMPLTNLVLKRLIDNWKSEQFSRILDFASQIADKESHKLKHEEAAVFNLESLITSLNGVNKRNYVRQLISVGFLSFLFRRFELGNVEEKTHVLALLVNCSEADSSCIYQIARNIDKKCLLHLLCSVDVAPGTSAISLLTELFSLKRNDVISFLSGFAGPDLLNTMDVLLLYLQNSSLRQKPLVAVLLLHLDLLTEPPMHCAYREEAVNAIAVALDASLHDDKVQEKCCRALLILKGLFAFKRKKQAKANILEQNEDENDSSAVNSCEHEEEGIISLVCLLSKEDEEEKNQEWLMKLLELLIGDGESPFLKNISRCLASRYLDLVKICLLTVTWLSSRLSVLSNSGSPLPAFPAIIYQMKGILQSGDLEFKTLASLSLFHFSKIPESRALMMTMAEDIATPLHRIVDVTWSAKQLLIMLGKDLLNLTGPGIIHLQPIVFTIAKPGPSVEFLDTEEHRHLDSLGDISVLRAASVLKNGALELYWVGDIAVDC 1197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4679g00050 1197 CDD RING-Ubox_PUB 657 716 IPR045210 -
Pral4679g00050 1197 MobiDBLite consensus disorder prediction 1 52 - -
Pral4679g00050 1197 Coils Coil 287 307 - -
Pral4679g00050 1197 Pfam U-box domain 656 727 IPR003613 GO:0004842|GO:0016567
Pral4679g00050 1197 ProSiteProfiles U-box domain profile. 655 730 IPR003613 GO:0004842|GO:0016567
Pral4679g00050 1197 SMART Ubox_2 659 723 IPR003613 GO:0004842|GO:0016567
Pral4679g00050 1197 SUPERFAMILY RING/U-box 646 726 - -
Pral4679g00050 1197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 655 730 IPR013083 -
Pral4679g00050 1197 MobiDBLite consensus disorder prediction 34 52 - -
Pral4679g00050 1197 MobiDBLite consensus disorder prediction 74 129 - -
Pral4679g00050 1197 MobiDBLite consensus disorder prediction 175 220 - -
Pral4679g00050 1197 SUPERFAMILY ARM repeat 769 1099 IPR016024 -
Pral4679g00050 1197 MobiDBLite consensus disorder prediction 630 649 - -
Pral4679g00050 1197 PANTHER OS04G0584500 PROTEIN 1 1122 - -
Pral4679g00050 1197 MobiDBLite consensus disorder prediction 507 527 - -
Pral4679g00050 1197 MobiDBLite consensus disorder prediction 454 473 - -
Pral4679g00050 1197 MobiDBLite consensus disorder prediction 451 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4679g00050 Pral-Chr4679 674759 690336 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4679g00050 656 723 U-box Gene Family AT5G42340 39.706 4.22e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4679g00050 - - pcin:129319608 1318.91