Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4679g00034 ATGATGGAGGTAGATTCTTTGCCCGAGTCGATCAAGAAAGTACAGTCAAGATTCAGTTTCGAGGTTCCTGAACCGGCTGTTCGCCTCGCTCTGACGGAATCTTGGTTCGACGTGGACGCTGCCGTGGAGTTCCTCAACAACAATCCCGGGTTTCTAGCCCGGCCCGTCACGGTGGTTCGGGCCGCTACTAGCACTGGCTCGAGGGTTTTGGCACCGACGCCGATAAAGCAAGAGGGGTTCGATGACTCGGTTATGTCCAATGGAATGAGTCTGAAGAGCGAGGTCAAAGAGGAACCCGTTCATTTGGCGATTGACAATCAAAACCCAGTGAAAGCAGAAAATGGTTCCGATGATTCTCATGAAGTGACACGACCACTCGAGGACTTGAATGTGAAGAAGGAAGCGAAGGAAGAAATCAATGTGGAGCCTGAGATGCAGGTTTCTGTGGAAGAAAAAGTGGATGTTGATGTTTCTAGGTCTTTAATGACCCAAACCCAGATGCAAGGGTCTACCGGTACTCGGAAATCTTCATGGGAAGCTGGATATGAAGAGTTCCTTAAGGCTACAGATGCAAAAGTTATGTCAAAGGAAGAATATCTAAAGTCCATTGAGGAACAACAACCATCAGTCCCGGTTGAGCGTTCGAAAGCAATGCAGGATTTGGCTTCTGTGAATAAGGTCTCTGAGAAGAAAGAAGTGGCTATCCCTGATAACGATGAAGTGAAAATCCTCAAAGAAGTTGGTTCCTTTCCATGTTTTCAGAAATCCTCGCAGGTGAAAAAGGAAAAGGTTGAACCTAGACCTGCAAACGTGGAGGATGGGGACTTTCCAGGAGAACCAGACTGGTTTTTAGTGGGAAGGACAATAATCACTGCACTTTCAACTACCAAAGGGAGGAAATTAGTGGACAATGAGATTGTACATTTCGATTTCCGATCTGCATTTGCGAAACAAAACTCAAAATGGATTCTTCGCATTTCAACCAAGCGTTCCGGAGAGGTTGGACGGGTTCCTATGGAATGGGCTAAAGAGGTTGTCCCACTTGTTCGTTCTGCAAGGATCAAGGTTAGAGGTCGATGTGTAGCTGCGCCACCTGTCTTACAAATGATGCAAGACGTCTTGGTGTGTGTAAGCTTTTACGTTCACCACTCTGCATTCACTTCAGAAGTCAATACTTCATGGAAGCTTGATGGCTCTACTTATATTGACCCTTCTGTTTATCCTCTTCCCGCGGTGTTCAAATTGATTGGAATGAAGCCATATCAGAATGCTGCTTTTACCCCAGAGGAACTTGATTCTAGGAAACGTTTGTTCAGTATCAGGGGTAACACAGATGAAGCTGCTTCAGATTTGCCCGTCTTGAAACGGAGAAAGGGTTGTCCTCCCGATCAAGACGATGAACAAGCTGTGTCACAGTCATCTTTGAATAAGCTTGTTGGAGCATCTGAAGTCTACGACTTGGAGGAGATGGAAGGGCCAAGCACGCTGATGTGTGATCTAAAGCCTTACCAGAAACAAGCACTGTATTGGATGTCAGAACTAGAGAAAGGAACTAATGCCCAGAATGCTGAAAATACTCTTCATCCTTGCTGGGCAGCCTATCGTATAGATGATATGACGGCTCCCATTATTTACGTAAACAACTTCACAGGGGAAGCAACAACTAAGCTCCCACCTGCATTTCGATTGCCAAGAGGAGGAATTCTCGCAGATGCTATGGGACTTGGGAAGACTGTCATGACTATTGCTCTAATTCTTGCGAGACAAGGGAGAGGAGATAATGCTGGTCTTTCGAGGAAGAGGGGCCAAGTTTCTCATAGTGACCCTGCATTCAAAGTTGATGGCGGCACTCTTGTTGTTTGTCCCATGGCATTGCTAGGTCAGTGGAAGGACGAGCTTGAAATCCATTCCAAGCCAGGAAGTTTATCCATTTTTGTTCACTACGGTGGGGATAGAACAAATGATCCTCGGGTGATCTCAGCGCATGATGTTGTTTTAACAACATATCGTGTCCTTGGAGATGCATATAAAACTTATGGAGAGAACAGCATTTACCACAGGGTCAACTGGCATAGGGTGGTCCTAGACGAAGCTCATTCCATTAAAGCCCATAAATCGTATCCTGCACAAGCCTCTTTTACACTGACCTCACACTGCCGTTGGTGTCTTACTGGAACTCCTCTACAGAATAGCTTGGAAGACCTATTCAGCCTCTTGTGCTTCTTGCATGTTCAGCCATGGGGCAATTTTGCATGGTTTAATAAATTGGTTCAACGGCCTTGTGAGAATGGTGATCCTCGAGGCTTGAAATTAGTCAAGGCTATTTTGAAGCCATTGATGTTAAGAAGAACAAAGGAAACAAAGGACAAGTGCGGAAGGCCCATACTTGTTCTTCCACCAGCTCACACTGAATTAGTTGAGTGTGAACAGTCAGCAGCTGAAGCTGAATTATATAATGCCCTCTTCAGGAAATCTAAACATCAATTCGATCAGTATGTTGGGCAAGGAAATGTTCTCAGCAACTATGCCAACATTCTTGGGTTATTATTGCGGTTGAGACAGTGTTGTAACCATCCATTTCTGATCACAAGCCGAAGTGATTCAAAGAAACCTGTGGACTTTGACATACTCGCAAAAAGACTACTCGATTTCAACTCTAATTCTACAAATCAGCGTGCATATGTTATAGAGGCCATAGAGGCTCTTCGCAAGGGTGAAAAACTAGACTGCCCAATATGCTTAGAATCTGCAGATGATCCTGTGTTCGCCCCATGTGCGCACAGAATGTGCAGGGAATGCTTATTTTCCAGCTGGAGTACCCAAATCAGTGGTCCTTGCCCTATCTGTCGTCAGATGCTAAACAGAACTGATCTAATCAATTGTCCGTTTGAGAATCAGTTCTTGGTTTCTGATGTTGAGAAGGACTGGAAGGAGTCTACCAAGGTTTCAGAGCTTTTGAAAAACTTGGAAGACATTCGGCAAAATCGCCCTGCTGAAAAAAGCATTGTGTTCAGCCAGTGGACTGCCTTTTTGGACCTCCTGGAGATTGCTTTGAAGAAGAAAGGAATTGGGTATTTTAGATTTGATGGGAGTCTGCAACAAAAGAATAGGGAAAGAGTTTTGAAGGAGTTTAATGAGTCAAGCTCGAAAAGGGTTTTGTTAATGTCACTTAAAGCTGGTGGTGTGGGCTTGAACTTGACTGCAGCCTCAAATGTTTTCATCATGGATCCTTGGTGGAATCCTGCGGTTGAAGAGCAAGCAGTCATGAGAATCCATCGTATAGGACAAAAGCGAACAGTTATGGTTAAAAGATTCATTGTCAAGGATACGGTGGAAGAGAGGCTGCAACAAGTGCAGGCTAAGAAGCAGAAGATGATATCTGGAGCCCTCACAGATGATGAGGTTCGGTCAACCAGGATTGAAGACCTCATGATGCTGTTCAGTTGA 3447 0.4494 MMEVDSLPESIKKVQSRFSFEVPEPAVRLALTESWFDVDAAVEFLNNNPGFLARPVTVVRAATSTGSRVLAPTPIKQEGFDDSVMSNGMSLKSEVKEEPVHLAIDNQNPVKAENGSDDSHEVTRPLEDLNVKKEAKEEINVEPEMQVSVEEKVDVDVSRSLMTQTQMQGSTGTRKSSWEAGYEEFLKATDAKVMSKEEYLKSIEEQQPSVPVERSKAMQDLASVNKVSEKKEVAIPDNDEVKILKEVGSFPCFQKSSQVKKEKVEPRPANVEDGDFPGEPDWFLVGRTIITALSTTKGRKLVDNEIVHFDFRSAFAKQNSKWILRISTKRSGEVGRVPMEWAKEVVPLVRSARIKVRGRCVAAPPVLQMMQDVLVCVSFYVHHSAFTSEVNTSWKLDGSTYIDPSVYPLPAVFKLIGMKPYQNAAFTPEELDSRKRLFSIRGNTDEAASDLPVLKRRKGCPPDQDDEQAVSQSSLNKLVGASEVYDLEEMEGPSTLMCDLKPYQKQALYWMSELEKGTNAQNAENTLHPCWAAYRIDDMTAPIIYVNNFTGEATTKLPPAFRLPRGGILADAMGLGKTVMTIALILARQGRGDNAGLSRKRGQVSHSDPAFKVDGGTLVVCPMALLGQWKDELEIHSKPGSLSIFVHYGGDRTNDPRVISAHDVVLTTYRVLGDAYKTYGENSIYHRVNWHRVVLDEAHSIKAHKSYPAQASFTLTSHCRWCLTGTPLQNSLEDLFSLLCFLHVQPWGNFAWFNKLVQRPCENGDPRGLKLVKAILKPLMLRRTKETKDKCGRPILVLPPAHTELVECEQSAAEAELYNALFRKSKHQFDQYVGQGNVLSNYANILGLLLRLRQCCNHPFLITSRSDSKKPVDFDILAKRLLDFNSNSTNQRAYVIEAIEALRKGEKLDCPICLESADDPVFAPCAHRMCRECLFSSWSTQISGPCPICRQMLNRTDLINCPFENQFLVSDVEKDWKESTKVSELLKNLEDIRQNRPAEKSIVFSQWTAFLDLLEIALKKKGIGYFRFDGSLQQKNRERVLKEFNESSSKRVLLMSLKAGGVGLNLTAASNVFIMDPWWNPAVEEQAVMRIHRIGQKRTVMVKRFIVKDTVEERLQQVQAKKQKMISGALTDDEVRSTRIEDLMMLFS 1148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4679g00034 1148 ProSitePatterns Zinc finger RING-type signature. 925 934 IPR017907 -
Pral4679g00034 1148 SMART HIRAN_2 285 381 IPR014905 GO:0003676|GO:0008270|GO:0016818
Pral4679g00034 1148 MobiDBLite consensus disorder prediction 101 127 - -
Pral4679g00034 1148 Pfam SNF2-related domain 503 861 IPR000330 GO:0005524|GO:0140658
Pral4679g00034 1148 ProSiteProfiles Zinc finger RING-type profile. 910 950 IPR001841 -
Pral4679g00034 1148 SUPERFAMILY RING/U-box 905 958 - -
Pral4679g00034 1148 CDD RING-HC 908 949 - -
Pral4679g00034 1148 Gene3D - 555 784 IPR038718 -
Pral4679g00034 1148 SMART helicmild6 1012 1095 IPR001650 -
Pral4679g00034 1148 CDD SF2_C_SNF 979 1106 - -
Pral4679g00034 1148 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 274 1147 - -
Pral4679g00034 1148 Pfam Zinc finger, C3HC4 type (RING finger) 910 949 IPR018957 GO:0046872
Pral4679g00034 1148 SMART ultradead3 496 758 IPR014001 -
Pral4679g00034 1148 CDD DEXDc_SHPRH-like 500 783 - -
Pral4679g00034 1148 Gene3D - 799 1148 IPR027417 -
Pral4679g00034 1148 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 486 783 IPR027417 -
Pral4679g00034 1148 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 558 745 IPR014001 -
Pral4679g00034 1148 Pfam Helicase conserved C-terminal domain 984 1095 IPR001650 -
Pral4679g00034 1148 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 883 975 IPR013083 -
Pral4679g00034 1148 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 981 1144 IPR001650 -
Pral4679g00034 1148 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 796 1143 IPR027417 -
Pral4679g00034 1148 SMART ring_2 910 949 IPR001841 -
Pral4679g00034 1148 Pfam HIRAN domain 289 375 IPR014905 GO:0003676|GO:0008270|GO:0016818
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4679g00034 Pral-Chr4679 541292 547994 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4679g00034 254 1147 RAD5 or RAD16-like Gene Family AT5G43530 62.569 0.0 1206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral4679g00034 SNF2_N 3.5e-79 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4679g00034 K15505 - cave:132178751 1289.25