Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4678g00002 ATGGCGGGAAGGAGGAAACCTCTGGTACTCGCTTCCACCAAATTGCTCATCAATTCTGTGCTCAGCTCGTCACAAGGTGGAGAAGCAAACACTGGAGCTGGAGACAAGCTCTTCGATGACGGCTCTCCCGGGAATTTGCGGTTACCTGTGGGGATTCTCCGACTCTCAGAGGGTGAAAACGAGAGACCAGAACCTCAATCGGATGCTCTTGACTATTCTGCGTCGGTCGGCCTATCAACTTCGCGTTTGAGAAGGCTTTCTATAACCTCGGGTTCGCTGGTGCTCGTGAAGAATGTTGAGATGAACATACAGAGAATTGCTCAGGTCGTTGCCCTAGATCCTCCTGGCAGTGATGAGTGCACATCTGATGTTAAACTGCCCTCTGCCCATATAATGCTTGTATTTCCTTCTTGTGCTTTCCCTCACGGCGACACAGTAGATGATGAAGTCGCTTATATATCTCCTCTCTTAGCTTTCAACCTCAATTTGCACATAACATGCTTAGAGTCCATCCTACAACAAGAGGAAGAGGTATTAGCATCTTATTTTAATCCAAAAGGTGATGATGAGGCTACTTCAAAAAGCACTGAGACTTCTGTCATTGATATAGAATTTGTACCTTTGGTTCAAGCGCCTAGGTGTGCATCGCATCTAAGGGTTTCTTTTGTGAAGATACCAGAATGTGGTACCCTTGAAACCCTCAGAGGAAGTTCGTCTATTGAATCAGAAGACCGCCAAAATATGATTGATTTAGCATTACAAAAATATTTTCAAGTGGATAGATATTTGGCAAAAGGAGATATTTTCAGCATCAGCATAAATTGGAACTGCAATTCCTTTGCATGTATTCCTTGCAACCGGAAATCACAAAAGAAAAATGAAAGTCTTATCTATTTCAAGGTCGTTGCTATGGAACCATCAGACGAACCAATTCTTCGTGTCAATCGAGCTTCAACTGCTTTGGTGCTGGGAGGGAGCTCCTCTTCTGCCCTTCCACCAGATTCGTTAATTGCTGGACCAGAAGAACCTGTGCCTTTACAAGGGGACACAGTAAAAATTTTGGCTTCTGTACTTACACCAGCTTTCTGTCCATCAGCACTTTCTTTAAAATTCAGAGTTTCAGTTCTATTGTATGGCTTAGCAGGTTGTGGAAAGCGGACTGTTGTTAGATATGTTGCTCGTCGATTAGGCCTGCATGTGGTGGAATATAATTGCCATGATTTAACAGTATCAGAGAGGAACACATCTGTCGCTCTAGTTCAGGCTTTCAAGACAGCTCAAAGATACTCACCAACTATACTTCTTCTCCATCATTTTGAAGTTTTTCGAGACATGCAAGCCCTTGAGGGTCCAATAAATGATCAAAGAGGCAATACATCTGAAATTGCATCAATTCTTAAGAAATTCACAGAGCCAACTCGTAAAGATGGTGGCATATACTCCCATGAGAAATCAAATGGTGAATTTGTTGAGAAGAGTGCTGAAAATAGAAGTGGGCATCAGATCCTGTTGATTGCAGCTGCTGCTAGTTCAGAAGGTCTGCCTTCGACTATCCGACGCTGCTTCAGCCATGAAATAAAAATGGGGCCTTTGACTGAAGAGCAAAGAGCTGAAATGCTATCTCAGTCACTGCAAAGTGTCCTCTCTATTACTGATGCTGAGAGTTTTGTAAAAGAAATAGTTGGGCAGACATCTGGTTTCATGCCCAGAGACATGTGTGCTTTGATTGCTGATGTTGGTGCCAACTTATTTCCCGGGAGTTCTGATGCTGTAGACAAAGCCAGGCCTGGGGATATTGATAATTCTTCTAGTTCTGAAGTGATCCGGGACAGTAACCACTGGAGAGTTTCACCAGAGGTTCAAGGCAAAGAACACTTGGCAAAAGTTTTGGAACGATCAAAGAAAAGAAATGCCGCTGCATTGGGTGCTCCAAAGGTTCCAGATGTCAAATGGGAAGATGTTGGTGGGCTTGAAGACGTGAAAAAATCCATACTGGATACTGTTCAGTTGCCTCTCCTGCATAAGGATCTGTTTTCATCTGGATTACGTAAGCGGTCTGGTGTTCTTCTGTATGGTCCCCCAGGAACTGGCAAAACGTTATTAGCCAAAGCTGTTGCTACTGAATGTTCCTTAAATTTTCTTAGTGTAAAAGGGCCTGAGCTGATCAACATGTACATTGGAGAGTCTGAGAAGAATGTGCGAGACACTTTCCAGAAGGCCAGATCATCACGACCCTGTGTTATCTTCTTCGATGAGCTTGATTCTCTTGCTCCAGCTCGGGGTGCTTCTGGGGATTCTGGGGGTGTTATGGACCGAGTGGTTTCTCAGATGCTGGCAGAGATTGATGGCCTCAATGATTCTGCACAGGATCTCTTTATCATAGGTGCAAGTAACAGGCCGGACTTGATAGACCCTGCACTTTTACGCCCGGGCAGATTTGATAAACTGCTGTATGTTGGAGTAAACTCGGATGCATCTTACAGAGAGAGGGTCCTTAAAGCACTCACCAGAAAGTTTAAATTGTCTGAAGACGTGTCACTTTACTCAATAGCTAAGAAGTGTCCACCAAACTTTACTGGTGCAGACATGTATGCCTTGTGTGCAGATGCATGGTTTCAGGCTGCGAAACGCAAGGTTTTAAGTGCAGATCCGGAGTCTTCCTGTAAAGATGATGAAGCAGACTCTGTTGTTGTTGAATACAGTGATTTTGTCCAGGTCTTGGTGGAGCTGACGCCTTCTCTGTCCATGGCTGAGCTTAAAAAGTACGAGCAGCTGAGAGATCAGTTTGAAGGCGCATCAAAATAA 2805 0.4421 MAGRRKPLVLASTKLLINSVLSSSQGGEANTGAGDKLFDDGSPGNLRLPVGILRLSEGENERPEPQSDALDYSASVGLSTSRLRRLSITSGSLVLVKNVEMNIQRIAQVVALDPPGSDECTSDVKLPSAHIMLVFPSCAFPHGDTVDDEVAYISPLLAFNLNLHITCLESILQQEEEVLASYFNPKGDDEATSKSTETSVIDIEFVPLVQAPRCASHLRVSFVKIPECGTLETLRGSSSIESEDRQNMIDLALQKYFQVDRYLAKGDIFSISINWNCNSFACIPCNRKSQKKNESLIYFKVVAMEPSDEPILRVNRASTALVLGGSSSSALPPDSLIAGPEEPVPLQGDTVKILASVLTPAFCPSALSLKFRVSVLLYGLAGCGKRTVVRYVARRLGLHVVEYNCHDLTVSERNTSVALVQAFKTAQRYSPTILLLHHFEVFRDMQALEGPINDQRGNTSEIASILKKFTEPTRKDGGIYSHEKSNGEFVEKSAENRSGHQILLIAAAASSEGLPSTIRRCFSHEIKMGPLTEEQRAEMLSQSLQSVLSITDAESFVKEIVGQTSGFMPRDMCALIADVGANLFPGSSDAVDKARPGDIDNSSSSEVIRDSNHWRVSPEVQGKEHLAKVLERSKKRNAAALGAPKVPDVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDTFQKARSSRPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSAQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDASYRERVLKALTRKFKLSEDVSLYSIAKKCPPNFTGADMYALCADAWFQAAKRKVLSADPESSCKDDEADSVVVEYSDFVQVLVELTPSLSMAELKKYEQLRDQFEGASK 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4678g00002 934 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 647 928 IPR027417 -
Pral4678g00002 934 PANTHER AAA-FAMILY ATPASE 70 931 - -
Pral4678g00002 934 CDD AAA 365 436 - -
Pral4678g00002 934 Gene3D - 348 549 IPR027417 -
Pral4678g00002 934 Gene3D - 822 908 - -
Pral4678g00002 934 FunFam Peroxisomal biogenesis factor 6 646 835 - -
Pral4678g00002 934 Gene3D - 646 923 IPR027417 -
Pral4678g00002 934 Pfam ATPase family associated with various cellular activities (AAA) 688 820 IPR003959 GO:0005524|GO:0016887
Pral4678g00002 934 Pfam ATPase family associated with various cellular activities (AAA) 375 528 IPR003959 GO:0005524|GO:0016887
Pral4678g00002 934 SMART AAA_5 371 532 IPR003593 GO:0016887
Pral4678g00002 934 SMART AAA_5 684 824 IPR003593 GO:0016887
Pral4678g00002 934 ProSitePatterns AAA-protein family signature. 791 809 IPR003960 GO:0005524|GO:0016887
Pral4678g00002 934 CDD RecA-like_PEX6_r2 660 819 IPR047533 -
Pral4678g00002 934 FunFam Peroxisome biogenesis protein 6 344 529 - -
Pral4678g00002 934 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 335 582 IPR027417 -
Pral4678g00002 934 FunFam Peroxisome biogenesis protein 6 822 908 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4678g00002 Pral-Chr4678 20811 28679 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4678g00002 654 893 Calmodulin-binding Proteins AT3G56690 37.759 4.75e-39 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4678g00002 K13339 - gmx:100820183 1295.8