Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4678g00001 ATGGCGGGAAGGAGGAAACCTCTGGTACTCGCTTCCACCAAATTGCTCATCAATTCTGTGCTCAGCTCGTCACAAGGTGGAGAAGCAAACACTGGAGCTGGAGACAAGCTCTTCGATGACGGCTCTCCCGGGAATTTGCGGTTACCTGTGGGGATTCTCCGACTCTCAGAGGGTGAAAACGAGAGACCAGAACCTCAATCGGATGCTCTTGACTATTCTGCGTCGGTCGGCCTATCAACTTCGCGTTTGAGAAGGCTTTCTATAACCTCGGGTTCGCTGGTGCTCGTGAAGAATGTTGAGATGAACATACAGAGAATTGCTCAGGTCGTTGCCCTAGATCCTCCTGGCAGTGATGAGTGCACATCTGATGTTAAACTGCCCTCTGCCCATATAATGCTTGTATTTCCTTCTTGTGCTTTCCCTCACGGCGACACAGTAGATGATGAAGTCGCTTATATATCTCCTCTCTTAGCTTTCAACCTCAATTTGCACATAACATGCTTAGAGTCCATCCTACAACAAGAGGAAGAGGTATTAGCATCTTATTTTAATCCAAAAGGTGATGATGAGGCTACTTCAAAAAGCACTGAGACTTCTGTCATTGATATAGAATTTGTACCTTTGGTTCAAGCGCCTAGGTGTGCATCGCATCTAAGGGTTTCTTTTGTGAAGATACCAGAATGTGGTACCCTTGAAACCCTCAGAGGAAGTTCGTCTATTGAATCAGAAGACCGCCAAAATATGATTGATTTAGCATTACAAAAATATTTTCAAGTGGATAGATATTTGGCAAAAGGAGATATTTTCAGCATCAGCATAAATTGGAACTGCAATTCCTTTGCATGTATTCCTTGCAACCGGAAATCACAAAAGAAAAATGAAAGTCTTATCTATTTCAAGGTCGTTGCTATGGAACCATCAGACGAACCAATTCTTCGTGTCAATCGAGCTTCAACTGCTTTGGTGCTGGGAGGGAGCTCCTCTTCTGCCCTTCCACCAGATTCGTTAATTGCTGGACCAGAAGAACCTGTGCCTTTACAAGGGGACACAGTAAAAATTTTGGCTTCTGTACTTACACCAGCTTTCTGTCCATCAGCACTTTCTTTAAAATTCAGAGTTTCAGTTCTATTGTATGGCTTAGCAGGTTGTGGAAAGCGGACTGTTGTTAGATATGTTGCTCGTCGATTAGGCCTGCATGTGGTGGAATATAATTGCCATGATTTAACAGTATCAGAGAGGAACACATCTGTCGCTCTAGTTCAGGCTTTCAAGACAGCTCAAAGATACTCACCAACTATACTTCTTCTCCATCATTTTGAAGTTTTTCGAGACATGCAAGCCCTTGAGGGTCCAATAAATGATCAAAGAGGCAATACATCTGAAATTGCATCAATTCTTAAGAAATTCACAGAGCCAACTCGTAAAGATGGTGGCATATACTCCCATGAGAAATCAAATGGTGAATTTGTAAGATCAAATGGTGGCATATCCATGGTTGAGAAGAGTGCTGAAAATAGAAGTGGGCATCAGATCCTGTTGATTGCAGCTGCTGCTAGTTCAGAAGGTCTGCCTTCGACTATCCGACGCTGCTTCAGCCATGAAATAAAAATGGGGCCTTTGACTGAAGAGCAAAGAGCTGAAATGCTATCTCAGTCACTGCAAAGTGTCCTCTCTATTACTGATGCTGAGAGTTTTGTAAAAGAAATAGTTGGGCAGACATCTGGTTTCATGCCCAGAGACATGTGTGCTTTGATTGCTGATGTTGGTGCCAACTTATTTCCCGGGAGTTCTGATGCTGTAGACAAAGCCAGGCCTGGGGATATTGATAATTCTTCTAGTTCTGAAGTGATCCGGGACAGTAACCACTGGAGAGTTTCACCAGAGGTTCAAGGCAAAGAACACTTGGCAAAAGTTTTGGAACGATCAAAGAAAAGAAATGCCGCTGCATTGGGTGCTCCAAAGGTTCCAGATGTCAAATGGGAAGATGTTGGTGGGCTTGAAGACGTGAAAAAATCCATACTGGATACTGTTCAGTTGCCTCTCCTGCATAAGGATCTGTTTTCATCTGGATTACGTAAGCGGTCTGGTGTTCTTCTGTATGGTCCCCCAGGAACTGGCAAAACGTTATTAGCCAAAGCTGTTGCTACTGAATGTTCCTTAAATTTTCTTAGTGTAAAAGGGCCTGAGCTGATCAACATGTACATTGGAGAGTCTGAGAAGAATGTGCGAGACACTTTCCAGAAGGCCAGATCATCACGACCCTGTGTTATCTTCTTCGATGAGCTTGATTCTCTTGCTCCAGCTCGGGGTGCTTCTGGGGATTCTGGGGGTGTTATGGACCGAGTGGTTTCTCAGATGCTGGCAGAGATTGATGGCCTCAATGATTCTGCACAGGATCTCTTTATCATAGGTGCAAGTAACAGGCCGGACTTGATAGACCCTGCACTTTTACGCCCGGGCAGATTTGATAAACTGCTGTATGTTGGAGTAAACTCGGATGCATCTTACAGAGAGAGGGTCCTTAAAGCACTCACCAGAAAGTTTAAATTGTCTGAAGACGTGTCACTTTACTCAATAGCTAAGAAGTGTCCACCAAACTTTACTGGTGCAGACATGTATGCCTTGTGTGCAGATGCATGGTTTCAGGCTGCGAAACGCAAGGTTTTAAGTGCAGATCCGGAGTCTTCCTGTAAAGATGATGAAGCAGACTCTGTTGTTGTTGAATACAGTGATTTTGTCCAGGTCTTGGTGGAGCTGACGCCTTCTCTGTCCATGGCTGAGCTTAAAAAGTACGAGCAGCTGAGAGATCAGTTTGAAGGCGCATCAAAATAA 2832 0.4417 MAGRRKPLVLASTKLLINSVLSSSQGGEANTGAGDKLFDDGSPGNLRLPVGILRLSEGENERPEPQSDALDYSASVGLSTSRLRRLSITSGSLVLVKNVEMNIQRIAQVVALDPPGSDECTSDVKLPSAHIMLVFPSCAFPHGDTVDDEVAYISPLLAFNLNLHITCLESILQQEEEVLASYFNPKGDDEATSKSTETSVIDIEFVPLVQAPRCASHLRVSFVKIPECGTLETLRGSSSIESEDRQNMIDLALQKYFQVDRYLAKGDIFSISINWNCNSFACIPCNRKSQKKNESLIYFKVVAMEPSDEPILRVNRASTALVLGGSSSSALPPDSLIAGPEEPVPLQGDTVKILASVLTPAFCPSALSLKFRVSVLLYGLAGCGKRTVVRYVARRLGLHVVEYNCHDLTVSERNTSVALVQAFKTAQRYSPTILLLHHFEVFRDMQALEGPINDQRGNTSEIASILKKFTEPTRKDGGIYSHEKSNGEFVRSNGGISMVEKSAENRSGHQILLIAAAASSEGLPSTIRRCFSHEIKMGPLTEEQRAEMLSQSLQSVLSITDAESFVKEIVGQTSGFMPRDMCALIADVGANLFPGSSDAVDKARPGDIDNSSSSEVIRDSNHWRVSPEVQGKEHLAKVLERSKKRNAAALGAPKVPDVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDTFQKARSSRPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSAQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDASYRERVLKALTRKFKLSEDVSLYSIAKKCPPNFTGADMYALCADAWFQAAKRKVLSADPESSCKDDEADSVVVEYSDFVQVLVELTPSLSMAELKKYEQLRDQFEGASK 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4678g00001 943 Gene3D - 348 558 IPR027417 -
Pral4678g00001 943 ProSitePatterns AAA-protein family signature. 800 818 IPR003960 GO:0005524|GO:0016887
Pral4678g00001 943 Gene3D - 655 932 IPR027417 -
Pral4678g00001 943 CDD RecA-like_PEX6_r2 669 828 IPR047533 -
Pral4678g00001 943 CDD AAA 365 436 - -
Pral4678g00001 943 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 656 937 IPR027417 -
Pral4678g00001 943 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 335 591 IPR027417 -
Pral4678g00001 943 Pfam ATPase family associated with various cellular activities (AAA) 375 537 IPR003959 GO:0005524|GO:0016887
Pral4678g00001 943 Pfam ATPase family associated with various cellular activities (AAA) 697 829 IPR003959 GO:0005524|GO:0016887
Pral4678g00001 943 FunFam Peroxisome biogenesis protein 6 344 538 - -
Pral4678g00001 943 Gene3D - 831 917 - -
Pral4678g00001 943 SMART AAA_5 693 833 IPR003593 GO:0016887
Pral4678g00001 943 SMART AAA_5 371 541 IPR003593 GO:0016887
Pral4678g00001 943 PANTHER AAA-FAMILY ATPASE 70 940 - -
Pral4678g00001 943 FunFam Peroxisome biogenesis protein 6 831 917 - -
Pral4678g00001 943 FunFam Peroxisomal biogenesis factor 6 655 844 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4678g00001 Pral-Chr4678 20810 28679 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4678g00001 663 902 Calmodulin-binding Proteins AT3G56690 37.759 5.85e-39 155